RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LINC00469Q8N7U9 141 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 RAB3IL1Q8TBN0 382 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 RPGRQ92834 1020 aaKnown RBP14.48□□□□□ -0.09
SHMT2-226ENST00000556825 ART4Q93070 314 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 ERLEC1Q96DZ1 483 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 EEF2KMTQ96G04 330 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.48□□□□□ -0.09
SHMT2-226ENST00000556825 SLC7A8Q9UHI5 535 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 CDH7Q9ULB5 785 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 RAB26Q9ULW5 256 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 PLA2G4CQ9UP65 541 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 DIS3Q9Y2L1 958 aaKnown RBP14.48□□□□□ -0.09
SHMT2-226ENST00000556825 FPGT-TNNI3KV9GXZ4 949 aa14.48□□□□□ -0.09
SHMT2-226ENST00000556825 FAM25EA8MYX2 175 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 B2RBV5 119 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 PDE8AO60658 829 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 FAM58BPP0C7Q3 252 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 PRDX6P30041 224 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 ERFP50548 548 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 SCNN1DP51172 638 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 TNIP1Q15025 636 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 SF3B3Q15393 1217 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 KYAT3Q6YP21 454 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 TPCN2Q8NHX9 752 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 TTC25Q96NG3 672 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 GCNAQ96QF7 691 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 CDC42EP4Q9H3Q1 356 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 FANCEQ9HB96 536 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 MOV10Q9HCE1 1003 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 DDX56Q9NY93 547 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 TBC1D14Q9P2M4 693 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 ANKFY1Q9P2R3 1169 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 ANGPTL3Q9Y5C1 460 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 PARP4Q9UKK3 1724 aaKnown RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 H3BNX3 289 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 KPNA4O00629 521 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 NKRFO15226 690 aaKnown RBP eCLIP14.47□□□□□ -0.09
SHMT2-226ENST00000556825 RHOBTB3O94955 611 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 CAMTA2O94983 1202 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 KRT6AP02538 564 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 KRT6BP04259 564 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 JAK1P23458 1154 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 CIITAP33076 1130 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 GUCY1A2P33402 732 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 SLC18A1P54219 525 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 B2MP61769 119 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 RALGDSQ12967 914 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 PTPROQ16827 1216 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 FAM91A1Q658Y4 838 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 IYDQ6PHW0 289 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 MICU3Q86XE3 530 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 LURAP1LQ8IV03 231 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 SUCLG2Q96I99 432 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 FERMT1Q9BQL6 677 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 CALN1Q9BXU9 219 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 ARHGEF4Q9NR80 690 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 LRRC4BQ9NT99 713 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 APPL1Q9UKG1 709 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 GPSM3Q9Y4H4 160 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 SQORQ9Y6N5 450 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 DCCP43146 1447 aa14.47□□□□□ -0.09
SHMT2-226ENST00000556825 FRMPD4Q14CM0 1322 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 A6NL46 340 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 KLHL2O95198 593 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 PCP11498 1178 aaKnown RBP14.46□□□□□ -0.09
SHMT2-226ENST00000556825 CXCR2P25025 360 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 EPS15P42566 896 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 PPP2R2BQ00005 443 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 TRIP10Q15642 601 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 TRIM16LQ309B1 348 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 SYCE1Q8N0S2 351 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 CADM3Q8N126 398 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 C12orf50Q8NA57 414 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-226ENST00000556825 TBC1D15Q8TC07 691 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 PGBD4Q96DM1 585 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 VMP1Q96GC9 406 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 KAZALD1Q96I82 304 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 UQCC2Q9BRT2 126 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 TDRD1Q9BXT4 1180 aaKnown RBP14.46□□□□□ -0.09
SHMT2-226ENST00000556825 CD209Q9NNX6 404 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 NDFIP2Q9NV92 336 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 BABAM1Q9NWV8 329 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 NAALADL1Q9UQQ1 740 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 PCDHA3Q9Y5H8 950 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 ABCB11O95342 1321 aa14.46□□□□□ -0.09
SHMT2-226ENST00000556825 TSPY2A6NKD2 308 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 KLRC4O43908 158 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 UGT1A9O60656 530 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 ACSL3O95573 720 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 TSPY3P0CV98 308 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 TSPY8P0CW00 308 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 SRGAP2CP0DJJ0 459 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 SRGAP2BP0DMP2 458 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 IFNAR1P17181 557 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 RPL17P18621 184 aaKnown RBP14.46□□□□□ -0.1
SHMT2-226ENST00000556825 UGT1A6P19224 532 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 UGT1A1P22309 533 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 UGT1A4P22310 534 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 CCNCP24863 283 aa14.46□□□□□ -0.1
SHMT2-226ENST00000556825 UGT1A3P35503 534 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms