RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MUM1Q2TAK8 710 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 CPB2Q96IY4 423 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 TJP2Q9UDY2 1190 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 PHTF1Q9UMS5 762 aa12.79□□□□□ -0.36
CCDC88C-211ENST00000556726 I3L4J1 428 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 MAPK13O15264 365 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 KCNN4O15554 427 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 RFC1P35251 1148 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 WNT7BP56706 349 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 SLC39A4Q6P5W5 647 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 FBXO16Q8IX29 292 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 CFAP61Q8NHU2 1237 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 ZNF526Q8TF50 670 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 ART4Q93070 314 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 SERPINB12Q96P63 405 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 CEP41Q9BYV8 373 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 KIAA1683Q9H0B3 1180 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 APOBEC3GQ9HC16 384 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 ZFP69BQ9UJL9 534 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 NAV1Q8NEY1 1877 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 B4GALT5O43286 388 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 ADORA2BP29275 332 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 ALDH5A1P51649 535 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 NPNTQ6UXI9 565 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 TMC2Q8TDI7 906 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 HESX1Q9UBX0 185 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 MROH7Q68CQ1 1323 aa12.78□□□□□ -0.36
CCDC88C-211ENST00000556726 KLRG2A4D1S0 409 aaPredicted RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 SNX3O60493 162 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 MMP13P45452 471 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 MMP14P50281 582 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 TMPRSS15P98073 1019 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 SPOCD1Q6ZMY3 1216 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 ZNF354CQ86Y25 554 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 FBXO36Q8NEA4 188 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 PPP1R36Q96LQ0 422 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 FAM111AQ96PZ2 611 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 MPHOSPH6Q99547 160 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 CXorf56Q9H5V9 222 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 WHRNQ9P202 907 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 PPARGC1AQ9UBK2 798 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 LPXNO60711 386 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 RPA3P35244 121 aaPredicted RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 GAD2Q05329 585 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 BMPR2Q13873 1038 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 ACCSLQ4AC99 568 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 ZC3H3Q8IXZ2 948 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 RCOR2Q8IZ40 523 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 PDCD7Q8N8D1 485 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 NIF3L1Q9GZT8 377 aa12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 DHX35Q9H5Z1 703 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.77□□□□□ -0.36
CCDC88C-211ENST00000556726 PTPRJQ12913 1337 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 CPP00450 1065 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 NUDT17P0C025 328 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 TXNP10599 105 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 GARTP22102 1010 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 COPS2P61201 443 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 MMRN1Q13201 1228 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 SCARA3Q6AZY7 606 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 MOB2Q70IA6 237 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 GPRASP2Q96D09 838 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 MRIQ9BWK5 157 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 SNX9Q9Y5X1 595 aa12.77□□□□□ -0.37
CCDC88C-211ENST00000556726 TTLL13PA6NNM8 815 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ANP32DO95626 131 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ATP6V1G2O95670 118 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 VTNP04004 478 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ADRA1DP25100 572 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 GCKP35557 465 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 RAD23BP54727 409 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NCKAP1LP55160 1127 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ELF3P78545 371 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 GCNT1Q02742 428 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 KDSRQ06136 332 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ZACNQ401N2 412 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 EFCAB12Q6NXP0 572 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 RMDN2Q96LZ7 410 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ROPN1BQ9BZX4 212 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ROPN1Q9HAT0 212 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 SMYD2Q9NRG4 433 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 FSCN2O14926 492 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 AVILO75366 819 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NQO1P15559 274 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 BCAR1P56945 870 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 SESN2P58004 480 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NOMO3P69849 1222 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 PDE1BQ01064 536 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 CAV1Q03135 178 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 MYBPC2Q14324 1141 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ZNF772Q68DY9 489 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 DENND1BQ6P3S1 775 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 FAM83AQ86UY5 434 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 AGBL3Q8NEM8 1001 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 SEPT1Q8WYJ6 367 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 AGAP3Q96P47 875 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NUDCD1Q96RS6 583 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NOP53Q9NZM5 478 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 TNRC6CQ9HCJ0 1690 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms