RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 PDHA1P08559 390 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 ITGALP20701 1170 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 SMARCA1P28370 1054 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 PRDX5P30044 214 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 CD6P30203 668 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 PIK3CGP48736 1102 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 ADKP55263 362 aaKnown RBP5.3□□□□□ -1.56
SCFD1-217ENST00000555953 TCF15Q12870 199 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 BMPR2Q13873 1038 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 ODF1Q14990 250 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 PLAC9Q5JTB6 97 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 ZNF66Q6ZN08 573 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 ZNF551Q7Z340 670 aaPredicted RBP5.3□□□□□ -1.56
SCFD1-217ENST00000555953 PPP1R32Q7Z5V6 425 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 FAM90A1Q86YD7 464 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 KLHDC4Q8TBB5 520 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 FAM136AQ96C01 138 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 TINAGL1Q9GZM7 467 aaPredicted RBP5.3□□□□□ -1.56
SCFD1-217ENST00000555953 SERHLQ9NQF3 203 aa5.3□□□□□ -1.56
SCFD1-217ENST00000555953 GNL3LQ9NVN8 582 aaKnown RBP5.3□□□□□ -1.56
SCFD1-217ENST00000555953 SOAT2O75908 522 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 NHLRC4P0CG21 123 aaPredicted RBP5.29□□□□□ -1.56
SCFD1-217ENST00000555953 RARBP10826 455 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 GUCY2FP51841 1108 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 ITKQ08881 620 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 KIF22Q14807 665 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 EFCAB2Q5VUJ9 269 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 REPS1Q96D71 796 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 MTMR8Q96EF0 704 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 SPC25Q9HBM1 224 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 ARHGEF3Q9NR81 526 aa5.29□□□□□ -1.56
SCFD1-217ENST00000555953 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 ZNF213O14771 459 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 PPM1DO15297 605 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 KATNA1O75449 491 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 KELP23276 732 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 CDKN1CP49918 316 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-217ENST00000555953 KLF9Q13886 244 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-217ENST00000555953 BOP1Q14137 746 aaKnown RBP5.28□□□□□ -1.56
SCFD1-217ENST00000555953 PROSER3Q2NL68 480 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 C11orf87Q6NUJ2 197 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 PNMA8AQ86V59 439 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-217ENST00000555953 C3orf20Q8ND61 904 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 ATRIPQ8WXE1 791 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 SH3BP4Q9P0V3 963 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 PCDHA3Q9Y5H8 950 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 RAD54BQ9Y620 910 aa5.28□□□□□ -1.56
SCFD1-217ENST00000555953 TISP43B9A030 160 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 NXPH3O95157 252 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 ZRANB2O95218 330 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCFD1-217ENST00000555953 FTH1P19P0C7X4 201 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 NDUFB7P17568 137 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 CDK11BP21127 795 aaKnown RBP5.27□□□□□ -1.57
SCFD1-217ENST00000555953 EPHB2P29323 1055 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 MPGP29372 298 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 GCLCP48506 637 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-217ENST00000555953 SLC44A4Q53GD3 710 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 CEP85Q6P2H3 762 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 NEK8Q86SG6 692 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 SEMA4CQ9C0C4 833 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 BTBD3Q9Y2F9 522 aa5.27□□□□□ -1.57
SCFD1-217ENST00000555953 H0YIZ8 118 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 JTBO76095 146 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 FAM163BP0C2L3 166 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 MAPK7Q13164 816 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 NOGQ13253 232 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 ETFDHQ16134 617 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 ZNF618Q5T7W0 954 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 MAVSQ7Z434 540 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 YTHDF3Q7Z739 585 aaKnown RBP5.26□□□□□ -1.57
SCFD1-217ENST00000555953 USP37Q86T82 979 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 TNPO1Q92973 898 aaKnown RBP5.26□□□□□ -1.57
SCFD1-217ENST00000555953 SIK2Q9H0K1 926 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 POLHQ9Y253 713 aa5.26□□□□□ -1.57
SCFD1-217ENST00000555953 TNKSO95271 1327 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 M0QYG6 137 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 LIPAP38571 399 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 ZNF134P52741 427 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 FAM50AQ14320 339 aaKnown RBP5.25□□□□□ -1.57
SCFD1-217ENST00000555953 PTPN21Q16825 1174 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 TEDDM1Q5T9Z0 273 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 TMEM108Q6UXF1 575 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 SLC29A4Q7RTT9 530 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 HEATR3Q7Z4Q2 680 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 TBC1D5Q92609 795 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 RPL36ALQ969Q0 106 aaKnown RBP5.25□□□□□ -1.57
SCFD1-217ENST00000555953 SH2D3AQ9BRG2 576 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 QTRT1Q9BXR0 403 aaKnown RBP5.25□□□□□ -1.57
SCFD1-217ENST00000555953 SLC13A1Q9BZW2 595 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 MRPL46Q9H2W6 279 aaKnown RBP5.25□□□□□ -1.57
SCFD1-217ENST00000555953 WDCPQ9H6R7 721 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 DLL3Q9NYJ7 618 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 ABCF2Q9UG63 623 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 ZDHHC8Q9ULC8 765 aa5.25□□□□□ -1.57
SCFD1-217ENST00000555953 SMIM22K7EJ46 135 aa5.24□□□□□ -1.57
SCFD1-217ENST00000555953 ARIH2O95376 493 aa5.24□□□□□ -1.57
SCFD1-217ENST00000555953 CERS1P27544 350 aa5.24□□□□□ -1.57
SCFD1-217ENST00000555953 CTGFP29279 349 aa5.24□□□□□ -1.57
SCFD1-217ENST00000555953 ALDH9A1P49189 494 aa5.24□□□□□ -1.57
SCFD1-217ENST00000555953 CLCN2P51788 898 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms