RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ENPEPQ07075 957 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 CCDC173Q0VFZ6 552 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 CETN1Q12798 172 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ITGA7Q13683 1181 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 KCNJ12Q14500 433 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 SURF1Q15526 300 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 FAM187BQ17R55 369 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ZC2HC1CQ53FD0 456 aaPredicted RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 TCP11X2Q5H9J9 407 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 FAM47CQ5HY64 1035 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 LCE1DQ5T752 114 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 CCSAPQ6IQ19 270 aaPredicted RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ARMCX5Q6P1M9 558 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 CXCL17Q6UXB2 119 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ZPBP2Q6X784 338 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 RPAINQ86UA6 219 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 LRRC71Q8N4P6 559 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 LINC01465Q8N7H1 131 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 XXYLT1Q8NBI6 393 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 RNF149Q8NC42 400 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 POMGNT1Q8WZA1 660 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 HPS3Q969F9 1004 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 MRFAP1L1Q96HT8 127 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ASB16Q96NS5 453 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 FIZ1Q96SL8 496 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 DUSP9Q99956 384 aaKnown RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ADPGKQ9BRR6 497 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 TCHPQ9BT92 498 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 NOC4LQ9BVI4 516 aaKnown RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 MRPL4Q9BYD3 311 aaKnown RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 GPRC5CQ9NQ84 441 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 STARD7Q9NQZ5 370 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 SAMSN1Q9NSI8 373 aaKnown RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ARHGAP28Q9P2N2 729 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 HDAC6Q9UBN7 1215 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 LIMA1Q9UHB6 759 aaKnown RBP5.45□□□□□ -1.54
VTI1B-202ENST00000553619 GTF2IRD1Q9UHL9 959 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ADAMTS6Q9UKP5 1117 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.45□□□□□ -1.545e-7■■□□□ 12.2
VTI1B-202ENST00000553619 MROH7Q68CQ1 1323 aa5.45□□□□□ -1.54
VTI1B-202ENST00000553619 ZSWIM8A7E2V4 1837 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 TRIP12Q14669 1992 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 A0A087WZ62 844 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 TRIM49BA6NDI0 452 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZNF233A6NK53 670 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 INO80B-WBP1J3KQ70 363 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 DNM1LO00429 736 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PES1O00541 588 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ACKR2O00590 384 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 HNRNPDLO14979 420 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CLIC2O15247 247 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CLDN3O15551 220 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 TGFB1I1O43294 461 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CAND2O75155 1236 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ERLIN2O94905 339 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SGPL1O95470 568 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PIGRP01833 764 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 NR3C1P04150 777 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PRKCBP05771 671 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PTMAP06454 111 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 GJB1P08034 283 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 HSPA1AP0DMV8 641 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 HSPA1BP0DMV9 641 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 HSPA8P11142 646 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CCL5P13501 91 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZNF18P17022 549 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 FUT4P22083 530 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SFPQP23246 707 aaKnown RBP eCLIP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 GPC3P51654 580 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CLCN3P51790 818 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZNF75DP51815 510 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CASP5P51878 434 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 LBX1P52954 281 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 COPB1P53618 953 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CRYBB1P53674 252 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SOX10P56693 466 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CAP1Q01518 475 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PRPF4BQ13523 1007 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CAPSQ13938 189 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 DSC3Q14574 896 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PTGISQ16647 500 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 MAN2A1Q16706 1144 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZCWPW2Q504Y3 356 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 MARCH8Q5T0T0 291 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZNF648Q5T619 568 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CDKAL1Q5VV42 579 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CDCA2Q69YH5 1023 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 INTS8Q75QN2 995 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ZC3H3Q8IXZ2 948 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 KIAA0319LQ8IZA0 1049 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 GPD1LQ8N335 351 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 USP38Q8NB14 1042 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SH3TC2Q8TF17 1288 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 LMBR1Q8WVP7 490 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 TRAPPC12Q8WVT3 735 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ISL2Q96A47 359 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CNOT6LQ96LI5 555 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 NLRP4Q96MN2 994 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ACO2Q99798 780 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms