RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	GALNT8	Q9NY28	637 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	DLL3	Q9NYJ7	618 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	LRP2BP	Q9P2M1	347 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	INSL6	Q9Y581	213 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	PLXNA3	P51805	1871 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	TECTA	O75443	2155 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	TNKS	O95271	1327 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	COL4A6	Q14031	1691 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	DMXL1	Q9Y485	3027 aa		2.85	□□□□□ -1.95
PTCH1-223	ENST00000551623	SPEF2	Q9C093	1822 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	KMT2E	Q8IZD2	1858 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FLNB	O75369	2602 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	AK9	Q5TCS8	1911 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	TCF20	Q9UGU0	1960 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623		A0A1B0GUL7	405 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PI4KAP2	A4QPH2	592 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	DDTL	A6NHG4	134 aa	Predicted RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	KLF4	O43474	513 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PQBP1	O60828	265 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FGB	P02675	491 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	CA3	P07451	260 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	IL9	P15248	144 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	ATP2A2	P16615	1042 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FGFR2	P21802	821 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PTGS1	P23219	599 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	STAT3	P40763	770 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	TMPO	P42166	694 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	GYG1	P46976	350 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	RGS3	P49796	1198 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	STAT5B	P51692	787 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	NEXN	Q0ZGT2	675 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	TCP10	Q12799	353 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FOXF2	Q12947	444 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	IFIT5	Q13325	482 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	ACAP1	Q15027	740 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PLEKHG4	Q58EX7	1191 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FSTL4	Q6MZW2	842 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	USP53	Q70EK8	1073 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	RNF180	Q86T96	592 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	MSL3	Q8N5Y2	521 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PI4KAP1	Q8N8J0	262 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623		Q8N9P0	234 aa	Predicted RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	LINS1	Q8NG48	757 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	WDR66	Q8TBY9	1149 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	C16orf92	Q96LL3	132 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	UIMC1	Q96RL1	719 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	MNT	Q99583	582 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	KCNJ15	Q99712	375 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	SPATA5L1	Q9BVQ7	753 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	CD244	Q9BZW8	370 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	UPF3A	Q9H1J1	476 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	AS3MT	Q9HBK9	375 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	CAPN10	Q9HC96	672 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	XPNPEP3	Q9NQH7	507 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	INCENP	Q9NQS7	918 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	HERC5	Q9UII4	1024 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	FAM50B	Q9Y247	325 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	MAP3K2	Q9Y2U5	619 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	LRRFIP2	Q9Y608	721 aa	Known RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	CEP250	Q9BV73	2442 aa		2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	2.84	□□□□□ -1.95
PTCH1-223	ENST00000551623	PDS5A	Q29RF7	1337 aa	Known RBP	2.84	□□□□□ -1.96
PTCH1-223	ENST00000551623	MROH5	Q6ZUA9	1318 aa		2.84	□□□□□ -1.96
PTCH1-223	ENST00000551623	WDR87	Q6ZQQ6	2873 aa		2.84	□□□□□ -1.96
PTCH1-223	ENST00000551623	PLXNA1	Q9UIW2	1896 aa		2.84	□□□□□ -1.96
PTCH1-223	ENST00000551623	COL4A4	P53420	1690 aa	Predicted RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	DNAJC9-AS1	A6NH13	148 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	GOLGA6L6	A8MZA4	724 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	CTAGE5	O15320	804 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	SSB	P05455	408 aa	Known RBP eCLIP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	ASNS	P08243	561 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	RARB	P10826	455 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	MYOG	P15173	224 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	TYRP1	P17643	537 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	ERCC5	P28715	1186 aa	Predicted RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	ADORA2A	P29274	412 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	CNGA1	P29973	690 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	PRDX5	P30044	214 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	USP14	P54578	494 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	ELL	P55199	621 aa	Predicted RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	RIPK4	P57078	832 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	RHBDL3	P58872	404 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	CD83	Q01151	205 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	DDR2	Q16832	855 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	TIGD2	Q4W5G0	525 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	TNNI3K	Q59H18	835 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	CAVIN4	Q5BKX8	364 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	FOXB2	Q5VYV0	432 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	BTBD8	Q5XKL5	378 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	KRT40	Q6A162	431 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	LDHAL6A	Q6ZMR3	332 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	SUGP1	Q8IWZ8	645 aa	Known RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	BOLL	Q8N9W6	283 aa	Known RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	FAM98A	Q8NCA5	519 aa	Known RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	FERMT2	Q96AC1	680 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	RMDN1	Q96DB5	314 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	PGBD4	Q96DM1	585 aa		2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	PABPC5	Q96DU9	382 aa	Known RBP	2.83	□□□□□ -1.96
PTCH1-223	ENST00000551623	MAML3	Q96JK9	1138 aa		2.83	□□□□□ -1.96

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