RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ZFP37Q9Y6Q3 630 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 GCN1Q92616 2671 aaKnown RBP7.28□□□□□ -1.24
LIMA1-204ENST00000549064 FREM2Q5SZK8 3169 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 EML5Q05BV3 1969 aa7.28□□□□□ -1.24
LIMA1-204ENST00000549064 DSPP15924 2871 aaKnown RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 A0A087WZ62 844 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 ERICH2A1L162 156 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 H3BRJ5 948 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 MEIS1O00470 390 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF862O60290 1169 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF623O75123 536 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 HTR3BO95264 441 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 RXRAP19793 462 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 CCR3P51677 355 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 SSRP1Q08945 709 aaKnown RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 GAS6Q14393 721 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 INPP5AQ14642 412 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 LRFN4Q6PJG9 635 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 PRSS55Q6UWB4 352 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 HEATR3Q7Z4Q2 680 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 CATIPQ7Z7H3 387 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 PLA2G4DQ86XP0 818 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 RAB11FIP4Q86YS3 637 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 NPAS3Q8IXF0 933 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 COLGALT2Q8IYK4 626 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 C12orf50Q8NA57 414 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 CTCFLQ8NI51 663 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 NUDT8Q8WV74 236 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 ZCCHC14Q8WYQ9 949 aaKnown RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 RSPH1Q8WYR4 309 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 GATA6Q92908 595 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 PLPPR2Q96GM1 343 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 FDXACB1Q9BRP7 624 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 LSM14BQ9BX40 385 aaKnown RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 ANO3Q9BYT9 981 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 GCOM2Q9BZD3 368 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 GPR62Q9BZJ7 368 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 RSAD1Q9HA92 442 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 LMAN1LQ9HAT1 526 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 C2orf42Q9NWW7 574 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 STK39Q9UEW8 545 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 CEP131Q9UPN4 1083 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 WASF3Q9UPY6 502 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 SSX2IPQ9Y2D8 614 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 MRPS17Q9Y2R5 130 aaKnown RBP7.27□□□□□ -1.25
LIMA1-204ENST00000549064 PCDHB2Q9Y5E7 798 aa7.27□□□□□ -1.25
LIMA1-204ENST00000549064 TMEM150BA6NC51 233 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 UPK3BL1B0FP48 263 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 UPK3BL2E5RIL1 263 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 FAM86B1E9PN63 330 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 IPO5O00410 1097 aaKnown RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 FAM86B2P0C5J1 330 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 SFPQP23246 707 aaKnown RBP eCLIP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 GUCY2CP25092 1073 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CXCL12P48061 93 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 RAB27AP51159 221 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 NOVA1P51513 510 aaKnown RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 ANTXR2P58335 489 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 TRDNQ13061 729 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 PPP2R5DQ14738 602 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 UGCGQ16739 394 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 SOWAHCQ53LP3 525 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 ARSHQ5FYA8 562 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 TANGO2Q6ICL3 276 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CEP68Q76N32 757 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 SV2AQ7L0J3 742 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CATSPER4Q7RTX7 472 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 TICAM2Q86XR7 235 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 KSR1Q8IVT5 923 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 ZSCAN1Q8NBB4 408 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 THAP3Q8WTV1 239 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 RABGGTAQ92696 567 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 PGBD4Q96DM1 585 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 MCRS1Q96EZ8 462 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 MBOAT7Q96N66 472 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 TM9SF2Q99805 663 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 SH2D3AQ9BRG2 576 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CCDC86Q9H6F5 360 aaKnown RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CHST7Q9NS84 486 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 DIAPH3Q9NSV4 1193 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 MIOSQ9NXC5 875 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 FRRS1LQ9P0K9 344 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 GMPR2Q9P2T1 348 aaKnown RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 CACNG4Q9UBN1 327 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 ZMYM5Q9UJ78 669 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 FBXW11Q9UKB1 542 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 VWA8A3KMH1 1905 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 BPTFQ12830 3046 aa7.26□□□□□ -1.25
LIMA1-204ENST00000549064 FLNBO75369 2602 aaKnown RBP7.26□□□□□ -1.25
LIMA1-204ENST00000549064 AKAP13Q12802 2813 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 IGLV3-22A0A075B6J6 115 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 TMEM8BA6NDV4 472 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 CYSRT1A8MQ03 144 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 ADARB2-AS1A8MUL3 147 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 K7ESF4 209 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 GFRA2O00451 464 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 FOXD2O60548 495 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-204ENST00000549064 C8AP07357 584 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 ZNF806P0C7X5 589 aa7.25□□□□□ -1.25
LIMA1-204ENST00000549064 MX2P20592 715 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms