RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 MED21Q13503 144 aa13.08□□□□□ -0.32
COL4A6-209ENST00000545689 TMEM119Q4V9L6 283 aa13.08□□□□□ -0.32
COL4A6-209ENST00000545689 SPDYCQ5MJ68 293 aa13.08□□□□□ -0.32
COL4A6-209ENST00000545689 ALG13Q9NP73 1137 aaKnown RBP13.08□□□□□ -0.32
COL4A6-209ENST00000545689 HSPA1AP0DMV8 641 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 HSPA1BP0DMV9 641 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 VDRP11473 427 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 GFAPP14136 432 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 ZNF720Q7Z2F6 126 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 EXD1Q8NHP7 514 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 FAM167BQ9BTA0 163 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SARS2Q9NP81 518 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 UBQLN1Q9UMX0 589 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 FAM237AA0A1B0GTK4 181 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 BNIP3LO60238 219 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SGPL1O95470 568 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 CNTFP26441 200 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 KLC1Q07866 573 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 CEP70Q8NHQ1 597 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TFB1MQ8WVM0 346 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TASP1Q9H6P5 420 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SLC40A1Q9NP59 571 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 RAB21Q9UL25 225 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 PXDNQ92626 1479 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 BRD2P25440 801 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 KLRK1P26718 216 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 C16orf87Q6PH81 154 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SPON2Q9BUD6 331 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 CCDC134Q9H6E4 229 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 NDFIP2Q9NV92 336 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SCHIP1Q9P0W5 487 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TRPC5OSA6NMA1 111 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 ITGA4P13612 1032 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 HSPA13P48723 471 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 CNGA3Q16281 694 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 NIPA1Q7RTP0 329 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 RNF135Q8IUD6 432 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 PKD2L2Q9NZM6 624 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SYNPO2Q9UMS6 1093 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TMX2Q9Y320 296 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 SUPT20HL2P0C7V6 817 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 CTCFP49711 727 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 LBRQ14739 615 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TFDP3Q5H9I0 405 aa13.07□□□□□ -0.32
COL4A6-209ENST00000545689 C1orf131Q8NDD1 294 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 STX18Q9P2W9 335 aaKnown RBP13.07□□□□□ -0.32
COL4A6-209ENST00000545689 TLR2O60603 784 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 GLRA3O75311 464 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 TAF6P49848 677 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 MAPRE1Q15691 268 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 DGKDQ16760 1214 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ZNF507Q8TCN5 953 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 C20orf96Q9NUD7 363 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 SLC24A2Q9UI40 661 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 FAM205AQ6ZU69 1335 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ANXA9O76027 345 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ATICP31939 592 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ZBTB41Q5SVQ8 909 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 WDR49Q8IV35 697 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 TARS2Q9BW92 718 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ARHGAP20Q9P2F6 1191 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 PYGLP06737 847 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 CDH2P19022 906 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 CCNG2Q16589 344 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 KBTBD12Q3ZCT8 623 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 FBXW10Q5XX13 1052 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 MPZL3Q6UWV2 235 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 MYCBPAPQ8TBZ2 947 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ATP8B4Q8TF62 1192 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ATG4CQ96DT6 458 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 DCDC2Q9UHG0 476 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 VPS9D1Q9Y2B5 631 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 TNS2Q63HR2 1409 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 C16orf96A6NNT2 1141 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 HNRNPRO43390 633 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 PROSCO94903 275 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 GNL1P36915 607 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 SLC26A2P50443 739 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ARMC2Q8NEN0 867 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 FAR2Q96K12 515 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 NAT9Q9BTE0 207 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ABCF3Q9NUQ8 709 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 TEKT2Q9UIF3 430 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 PJA2O43164 708 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 HMOX2P30519 316 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 TCF7P36402 384 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 KCNJ1P48048 391 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 ILF2Q12905 390 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 CLEC16AQ2KHT3 1053 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 FAM71DQ8N9W8 422 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 DNAJC9Q8WXX5 260 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 NAF1Q96HR8 494 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 PI4K2AQ9BTU6 479 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 GID8Q9NWU2 228 aa13.06□□□□□ -0.32
COL4A6-209ENST00000545689 CHCHD3Q9NX63 227 aaKnown RBP13.06□□□□□ -0.32
COL4A6-209ENST00000545689 MRPS35P82673 323 aaKnown RBP13.05□□□□□ -0.32
COL4A6-209ENST00000545689 MAP3K10Q02779 954 aa13.05□□□□□ -0.32
COL4A6-209ENST00000545689 CYP24A1Q07973 514 aa13.05□□□□□ -0.32
COL4A6-209ENST00000545689 ST3GAL1Q11201 340 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms