RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 KIF12Q96FN5 646 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 TIPINQ9BVW5 301 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 SMG9Q9H0W8 520 aaKnown RBP13.93□□□□□ -0.18
USP28-212ENST00000544750 FBRSL1Q9HCM7 1045 aaKnown RBP13.93□□□□□ -0.18
USP28-212ENST00000544750 ZMIZ1Q9ULJ6 1067 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 SLC8A2Q9UPR5 921 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 GTF3C3Q9Y5Q9 886 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 STK24Q9Y6E0 443 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 PLXND1Q9Y4D7 1925 aa13.93□□□□□ -0.18
USP28-212ENST00000544750 PKD1L2Q7Z442 2459 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 CEP192Q8TEP8 1941 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 PP2D1A8MPX8 630 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 LACTBL1A8MY62 500 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 RNF40O75150 1001 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 EGFP01133 1207 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 CYP11A1P05108 521 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 PLS3P13797 630 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 HOXB3P14651 431 aaPredicted RBP13.92□□□□□ -0.18
USP28-212ENST00000544750 CDC25CP30307 473 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 GRSF1Q12849 480 aaKnown RBP eCLIP13.92□□□□□ -0.18
USP28-212ENST00000544750 STRN3Q13033 797 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 PTPAQ15257 358 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 IL17AQ16552 155 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 SPATA1Q5VX52 437 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 TRIM68Q6AZZ1 485 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 DSTYKQ6XUX3 929 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 EZH1Q92800 747 aaPredicted RBP13.92□□□□□ -0.18
USP28-212ENST00000544750 SENP8Q96LD8 212 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 EBF3Q9H4W6 596 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 THG1LQ9NWX6 298 aaKnown RBP13.92□□□□□ -0.18
USP28-212ENST00000544750 ZMYM5Q9UJ78 669 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 CCL26Q9Y258 94 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 DMXL2Q8TDJ6 3036 aa13.92□□□□□ -0.18
USP28-212ENST00000544750 GON4LQ3T8J9 2241 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 BCLAF3A2AJT9 711 aaKnown RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 PIRO00625 290 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 F11P03951 625 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 CDC25AP30304 524 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 TUFMP49411 452 aaKnown RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 TOB1P50616 345 aaPredicted RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 COL9A2Q14055 689 aaPredicted RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 ENOX2Q16206 610 aaKnown RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 NAIF1Q69YI7 327 aaPredicted RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 ARMCX5Q6P1M9 558 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 FBXO18Q8NFZ0 1043 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 USP13Q92995 863 aaPredicted RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 C8orf76Q96K31 380 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 TSPAN18Q96SJ8 248 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 EDEM2Q9BV94 578 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 ZCWPW1Q9H0M4 648 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 SH2B1Q9NRF2 756 aaPredicted RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 EBF1Q9UH73 591 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 KCNG1Q9UIX4 513 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 TBX20Q9UMR3 447 aa13.91□□□□□ -0.18
USP28-212ENST00000544750 MYO18AQ92614 2054 aaKnown RBP13.91□□□□□ -0.18
USP28-212ENST00000544750 LNP1A1A4G5 178 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 ANO9A1A5B4 782 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 C4orf47A7E2U8 309 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 DCLK1O15075 740 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 XPOTO43592 962 aaKnown RBP13.9□□□□□ -0.18
USP28-212ENST00000544750 ODC1P11926 461 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 ARSAP15289 507 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 HMGA1P17096 107 aaKnown RBP13.9□□□□□ -0.18
USP28-212ENST00000544750 DRD1P21728 446 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 NOVA1P51513 510 aaKnown RBP13.9□□□□□ -0.18
USP28-212ENST00000544750 GALK1P51570 392 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 NCKAP1LP55160 1127 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 PPP2R3AQ06190 1150 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 SLC39A12Q504Y0 691 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 HYIQ5T013 277 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 SYT13Q7L8C5 426 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 LRRTM3Q86VH5 581 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 SEPT5Q99719 369 aaPredicted RBP13.9□□□□□ -0.18
USP28-212ENST00000544750 MYOFQ9NZM1 2061 aa13.9□□□□□ -0.18
USP28-212ENST00000544750 CACNA1EQ15878 2313 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 CAVIN2O95810 425 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 TOP3BO95985 862 aaKnown RBP13.89□□□□□ -0.19
USP28-212ENST00000544750 HAPLN1P10915 354 aaPredicted RBP13.89□□□□□ -0.19
USP28-212ENST00000544750 PAX3P23760 479 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 GJA4P35212 333 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 SMTNP53814 917 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 NLRP12P59046 1061 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 RAD51AP2Q09MP3 1159 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 ZNF252P-AS1Q0IIN9 211 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 VEPH1Q14D04 833 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 MGAT5BQ3V5L5 792 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 FBXO43Q4G163 708 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 C9orf57Q5W0N0 161 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 KRT79Q5XKE5 535 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 MAB21L3Q8N8X9 362 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 SYT2Q8N9I0 419 aaPredicted RBP13.89□□□□□ -0.19
USP28-212ENST00000544750 C2orf15Q8WU43 125 aaKnown RBP13.89□□□□□ -0.19
USP28-212ENST00000544750 GATA6Q92908 595 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 PNMA5Q96PV4 448 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 RAB34Q9BZG1 259 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 KIF9Q9HAQ2 790 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 TDP1Q9NUW8 608 aa13.89□□□□□ -0.19
USP28-212ENST00000544750 LIMCH1Q9UPQ0 1083 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms