RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MAIP1Q8WWC4 291 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 ZNF518BQ9C0D4 1074 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 FAM49AQ9H0Q0 323 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-204ENST00000543140 AGAP1Q9UPQ3 857 aa17.28■□□□□ 0.36
COL4A1-204ENST00000543140 GBP1P32455 592 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 PRUNE1Q86TP1 453 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 IFNLR1Q8IU57 520 aaPredicted RBP17.27■□□□□ 0.36
COL4A1-204ENST00000543140 CXorf38Q8TB03 319 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 HPDLQ96IR7 371 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 TLDC2A0PJX2 215 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 TP73O15350 636 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 MAN1A1P33908 653 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 NFX1Q12986 1120 aaKnown RBP17.27■□□□□ 0.36
COL4A1-204ENST00000543140 TMEM132DQ14C87 1099 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 PLEKHH3Q7Z736 793 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 SLC4A11Q8NBS3 891 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 BCAS4Q8TDM0 211 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 SLCO2A1Q92959 643 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 ELOVL4Q9GZR5 314 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 CXCL16Q9H2A7 254 aa17.27■□□□□ 0.36
COL4A1-204ENST00000543140 CWC15Q9P013 229 aaKnown RBP17.27■□□□□ 0.36
COL4A1-204ENST00000543140 COL1A2P08123 1366 aa17.27■□□□□ 0.35
COL4A1-204ENST00000543140 CELF2O95319 508 aaKnown RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ITGBL1O95965 494 aaPredicted RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 KRT1P04264 644 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 CDH5P33151 784 aaPredicted RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 RFC1P35251 1148 aaPredicted RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 IRX5P78411 483 aaPredicted RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 DGKDQ16760 1214 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 PPP1R15BQ5SWA1 713 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 SPRYD7Q5W111 196 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 MFSD7Q6UXD7 560 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ATL2Q8NHH9 583 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ACAP3Q96P50 834 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ABHD16BQ9H3Z7 469 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 DNAJC17Q9NVM6 304 aaKnown RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 CENPFP49454 3210 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 CAND2O75155 1236 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 GAS8O95995 478 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ADCY8P40145 1251 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 MAGOHP61326 146 aaKnown RBP17.26■□□□□ 0.35
COL4A1-204ENST00000543140 C3orf20Q8ND61 904 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 CPXM1Q96SM3 734 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 ASB7Q9H672 318 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 SYNCQ9H7C4 482 aa17.26■□□□□ 0.35
COL4A1-204ENST00000543140 A0A1B0GUA9 196 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 DYNC1LI2O43237 492 aaPredicted RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 MED7O43513 233 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 PSMC1P62191 440 aaKnown RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 JOSD2Q8TAC2 188 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 RAPGEF5Q92565 580 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 LENG1Q96BZ8 264 aaPredicted RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 SLITRK1Q96PX8 696 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 PARK7Q99497 189 aaKnown RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 RNF19AQ9NV58 838 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 DPP3Q9NY33 737 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 CPA4Q9UI42 421 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 CILPO75339 1184 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 KRT3P12035 628 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 IVDP26440 423 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 EIF3BP55884 814 aaKnown RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 PTPN11Q06124 597 aaPredicted RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 PDE4CQ08493 712 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 SPDYCQ5MJ68 293 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 RCOR2Q8IZ40 523 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 EMC1Q8N766 993 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 GRK7Q8WTQ7 553 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 SNF8Q96H20 258 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 TMEM176AQ96HP8 235 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 HEXIM2Q96MH2 286 aaKnown RBP17.25■□□□□ 0.35
COL4A1-204ENST00000543140 PWWP2AQ96N64 755 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 ADPGKQ9BRR6 497 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 CDHR5Q9HBB8 845 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 WHRNQ9P202 907 aa17.25■□□□□ 0.35
COL4A1-204ENST00000543140 UNCXA6NJT0 531 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 NUDT17P0C025 328 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 PSMA2P25787 234 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 LSP1P33241 339 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 CHKAP35790 457 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 MDH1P40925 334 aaKnown RBP17.24■□□□□ 0.35
COL4A1-204ENST00000543140 CCT5P48643 541 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 ITGA8P53708 1063 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 PTK6Q13882 451 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 PIGHQ14442 188 aaPredicted RBP17.24■□□□□ 0.35
COL4A1-204ENST00000543140 CCNG2Q16589 344 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 FAM110CQ1W6H9 321 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 EMC10Q5UCC4 262 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 GSTA5Q7RTV2 222 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 C2orf69Q8N8R5 385 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 UBA3Q8TBC4 463 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 HAUS1Q96CS2 278 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 KIF12Q96FN5 646 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 DDX23Q9BUQ8 820 aaKnown RBP17.24■□□□□ 0.35
COL4A1-204ENST00000543140 LRRD1A4D1F6 860 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 PIK3R2O00459 728 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 ERBB2P04626 1255 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 PAEPP09466 180 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 RARGP13631 454 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 ATF2P15336 505 aa17.24■□□□□ 0.35
COL4A1-204ENST00000543140 SLCO1A2P46721 670 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms