RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	GABBR1	Q9UBS5	961 aa		13.62	□□□□□ -0.23
DDX11-223	ENST00000542838	LNPEP	Q9UIQ6	1025 aa		13.62	□□□□□ -0.23
DDX11-223	ENST00000542838	PIAS1	O75925	651 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	UPP2	O95045	317 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	RPS6	P62753	249 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	MCL1	Q07820	350 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	TFDP1	Q14186	410 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	RASA2	Q15283	850 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	OASL	Q15646	514 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	HIF1A	Q16665	826 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	TSNAXIP1	Q2TAA8	658 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	CDAN1	Q8IWY9	1227 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	SEPT12	Q8IYM1	358 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	RFWD2	Q8NHY2	731 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	SH3TC2	Q8TF17	1288 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	DCLRE1B	Q9H816	532 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	PCDH9	Q9HC56	1237 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF70	Q9UC06	446 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	RABGEF1	Q9UJ41	708 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	PTPRJ	Q12913	1337 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838		F8VP50	259 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	LMNA	P02545	664 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	SSTR1	P30872	391 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	PHB	P35232	272 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	NLRP11	P59045	1033 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	SATB1	Q01826	763 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	TXNRD3NB	Q6F5E7	133 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF398	Q8TD17	642 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	PYROXD1	Q8WU10	500 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	TLE6	Q9H808	572 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	SSU72	Q9NP77	194 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	RPL26L1	Q9UNX3	145 aa	Known RBP	13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	PCDHA10	Q9Y5I2	948 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	NUMBL	Q9Y6R0	609 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	CLUH	O75153	1309 aa		13.61	□□□□□ -0.23
DDX11-223	ENST00000542838	hCG_1818297	A0A087WSY0	165 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	LRRD1	A4D1F6	860 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	TMEM191C	A6NGB0	347 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	SPDYE2B	A6NHP3	402 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	GOLGA8R	I6L899	631 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	HNRNPCL1	O60812	293 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	MMP10	P09238	476 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	TMEM191B	P0C7N4	346 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	SPDYE6	P0CI01	402 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CLDN10	P78369	228 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CTC1	Q2NKJ3	1217 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	RFWD3	Q6PCD5	774 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	TCP10L	Q8TDR4	215 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	DNAJC9	Q8WXX5	260 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	MCEE	Q96PE7	176 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	RMDN3	Q96TC7	470 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	KLF6	Q99612	283 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	MIPEP	Q99797	713 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	C12orf65	Q9H3J6	166 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838		A0A0G2JND7	137 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	DPPA5	A6NC42	116 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ENO4	A6NNW6	628 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	NDC80	O14777	642 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF862	O60290	1169 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ZBED4	O75132	1171 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ITGAV	P06756	1048 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ATP4A	P20648	1035 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	GLRA2	P23416	452 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	SESN3	P58005	492 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	GAD2	Q05329	585 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF252P-AS1	Q0IIN9	211 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	MUM1	Q2TAK8	710 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	TFDP3	Q5H9I0	405 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	PPP1R2P3	Q6NXS1	205 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	DCUN1D2	Q6PH85	259 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF483	Q8TF39	744 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	PAFAH2	Q99487	392 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CADM1	Q9BY67	442 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	KANSL3	Q9P2N6	904 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	WDR81	Q562E7	1941 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CFAP69	A5D8W1	941 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ACADS	P16219	412 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CCDC6	Q16204	474 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	KHDC1	Q4VXA5	237 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	CMPK2	Q5EBM0	449 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	C4orf50	Q6ZRC1	276 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	C3orf62	Q6ZUJ4	267 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ATP11C	Q8NB49	1132 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	PDCD2L	Q9BRP1	358 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ZNF341	Q9BYN7	854 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	MANSC1	Q9H8J5	431 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	ALG13	Q9NP73	1137 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	SLC17A7	Q9P2U7	560 aa		13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	AGO2	Q9UKV8	859 aa	Known RBP	13.6	□□□□□ -0.23
DDX11-223	ENST00000542838	YDJC	A8MPS7	323 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	CCDC22	O60826	627 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	HAUS5	O94927	633 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	MYCN	P04198	464 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	MMP8	P22894	467 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	CTCF	P49711	727 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	ARL4C	P56559	192 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	MRPS35	P82673	323 aa	Known RBP	13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	FNBP1L	Q5T0N5	605 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	ARHGEF16	Q5VV41	709 aa		13.59	□□□□□ -0.23
DDX11-223	ENST00000542838	DNAJC24	Q6P3W2	148 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms