RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 UCHL3P15374 230 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 KLRC2P26717 231 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 OR1D2P34982 312 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 NDST1P52848 882 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 TSPY1Q01534 308 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 ADGRE1Q14246 886 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 SMYD5Q6GMV2 418 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 OR10T2Q8NGX3 314 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 CDX2Q99626 313 aaPredicted RBP18.28■□□□□ 0.52
LIG1-204ENST00000542460 TRIM5Q9C035 493 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 DNAI2Q9GZS0 605 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 NSUN3Q9H649 340 aaKnown RBP18.28■□□□□ 0.52
LIG1-204ENST00000542460 CDH9Q9ULB4 789 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 MTCH2Q9Y6C9 303 aa18.28■□□□□ 0.52
LIG1-204ENST00000542460 UNC80Q8N2C7 3258 aa18.27■□□□□ 0.52
LIG1-204ENST00000542460 TRANK1O15050 2925 aa18.27■□□□□ 0.52
LIG1-204ENST00000542460 NOL4O94818 638 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 ACO1P21399 889 aaKnown RBP18.27■□□□□ 0.51
LIG1-204ENST00000542460 IGFBP4P22692 258 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 ACAT1P24752 427 aaKnown RBP18.27■□□□□ 0.51
LIG1-204ENST00000542460 PBX1P40424 430 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 RAB33AQ14088 237 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 IQCEQ6IPM2 695 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 DCP1BQ8IZD4 617 aaKnown RBP18.27■□□□□ 0.51
LIG1-204ENST00000542460 UBR7Q8N806 425 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 TNIP3Q96KP6 325 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 NT5C1AQ9BXI3 368 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 NAA15Q9BXJ9 866 aaKnown RBP18.27■□□□□ 0.51
LIG1-204ENST00000542460 ZCWPW1Q9H0M4 648 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 GANQ9H2C0 597 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 TLE6Q9H808 572 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 NME7Q9Y5B8 376 aa18.27■□□□□ 0.51
LIG1-204ENST00000542460 ADAM12O43184 909 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 AP5Z1O43299 807 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 HCRTO43612 131 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 CPB1P15086 417 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 TRIM21P19474 475 aaKnown RBP18.26■□□□□ 0.51
LIG1-204ENST00000542460 ARPP19P56211 112 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 GPR17Q13304 367 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 PTPN21Q16825 1174 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 ARHGAP44Q17R89 818 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 INTS6LQ5JSJ4 861 aaKnown RBP18.26■□□□□ 0.51
LIG1-204ENST00000542460 ADGRD2Q7Z7M1 963 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 PPFIBP1Q86W92 1011 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 GLYCTKQ8IVS8 523 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 CRYBG2Q8N1P7 616 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 WHAMMQ8TF30 809 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 MYLIPQ8WY64 445 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 SYT15Q9BQS2 421 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 STK33Q9BYT3 514 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 PCDHB4Q9Y5E5 795 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 FHOD1Q9Y613 1164 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 VWA8A3KMH1 1905 aa18.26■□□□□ 0.51
LIG1-204ENST00000542460 CLASP2O75122 1294 aaKnown RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 C1RP00736 705 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 PTPN1P18031 435 aaKnown RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 POLR2FP61218 127 aaKnown RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 ROR1Q01973 937 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 SMARCB1Q12824 385 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 TPGS2Q68CL5 300 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 TMEM270Q6UE05 265 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 RBM23Q86U06 439 aaKnown RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 ZNF461Q8TAF7 563 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 SHC3Q92529 594 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 TMEM209Q96SK2 561 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 CDCA3Q99618 268 aaPredicted RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 HMGXB4Q9UGU5 601 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 CNTN6Q9UQ52 1028 aa18.25■□□□□ 0.51
LIG1-204ENST00000542460 COL4A4P53420 1690 aaPredicted RBP18.25■□□□□ 0.51
LIG1-204ENST00000542460 FSD2A1L4K1 749 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 PER2O15055 1255 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 EPHB6O15197 1021 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 ATP2C2O75185 946 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 ABLIM3O94929 683 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 OR4Q2P0C623 313 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 NRIP1P48552 1158 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 PSMC1P62191 440 aaKnown RBP18.24■□□□□ 0.51
LIG1-204ENST00000542460 RAPGEF1Q13905 1077 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 MAPRE1Q15691 268 aaKnown RBP18.24■□□□□ 0.51
LIG1-204ENST00000542460 DUSP6Q16828 381 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 SLC39A12Q504Y0 691 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 ZNF394Q53GI3 561 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 FAM171BQ6P995 826 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 ACOT1Q86TX2 421 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 LRRTM3Q86VH5 581 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 PALB2Q86YC2 1186 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 B3GALNT2Q8NCR0 500 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 TMEM176AQ96HP8 235 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 TWNKQ96RR1 684 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 NUP58Q9BVL2 599 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 ELOVL4Q9GZR5 314 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 DPEP3Q9H4B8 488 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 AJAP1Q9UKB5 411 aaPredicted RBP18.24■□□□□ 0.51
LIG1-204ENST00000542460 GTF3C4Q9UKN8 822 aa18.24■□□□□ 0.51
LIG1-204ENST00000542460 WDR27A2RRH5 827 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 MYBPHLA2RUH7 354 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 GOLGA6L3A6NEY3 463 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 TGM5O43548 720 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 CLCN4P51793 760 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 RAD23BP54727 409 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms