RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 ABCD1P33897 745 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 SLC1A1P43005 524 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 RNASE9P60153 205 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 WDR5P61964 334 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 ARHGAP4P98171 946 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 CENPCQ03188 943 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 DYNC1I2Q13409 638 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 PRPF4BQ13523 1007 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 GPNMBQ14956 572 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 RASA2Q15283 850 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 ARHGEF16Q5VV41 709 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 CCDC137Q6PK04 289 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 BZW1Q7L1Q6 419 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 FAM228AQ86W67 206 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 MFN1Q8IWA4 741 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 FAM186BQ8IYM0 893 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 OR2W6PQ8NHA6 318 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 ZFAND2BQ8WV99 257 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 KIFAP3Q92845 792 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 KHSRPQ92945 711 aaKnown RBP eCLIP11.01□□□□□ -0.652e-8■□□□□ 8.9
CHFR-219ENST00000541341 ARHGEF2Q92974 986 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 WNT8BQ93098 351 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 ZBTB9Q96C00 473 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 HINFPQ9BQA5 517 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 ZSWIM1Q9BR11 485 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 SEZ6LQ9BYH1 1024 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 AZI2Q9H6S1 392 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 TUFT1Q9NNX1 390 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 STOML1Q9UBI4 398 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 PACSIN2Q9UNF0 486 aaPredicted RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 USP20Q9Y2K6 914 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 LRRC42Q9Y546 428 aa11.01□□□□□ -0.65
CHFR-219ENST00000541341 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.01□□□□□ -0.65
CHFR-219ENST00000541341 RALGAPA2Q2PPJ7 1873 aa11□□□□□ -0.65
CHFR-219ENST00000541341 BDP1A6H8Y1 2624 aa11□□□□□ -0.65
CHFR-219ENST00000541341 MYH9P35579 1960 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 SMAPO00193 183 aa11□□□□□ -0.65
CHFR-219ENST00000541341 PITPNM1O00562 1244 aa11□□□□□ -0.65
CHFR-219ENST00000541341 DDX3XO00571 662 aaKnown RBP eCLIP11□□□□□ -0.654e-11■■■□□ 16.3
CHFR-219ENST00000541341 NKRFO15226 690 aaKnown RBP eCLIP11□□□□□ -0.654e-11■□□□□ 9.9
CHFR-219ENST00000541341 MAGEB2O15479 319 aa11□□□□□ -0.65
CHFR-219ENST00000541341 NBNO60934 754 aa11□□□□□ -0.65
CHFR-219ENST00000541341 UNC5CO95185 931 aa11□□□□□ -0.65
CHFR-219ENST00000541341 GH1P01241 217 aa11□□□□□ -0.65
CHFR-219ENST00000541341 ATP5BP06576 529 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 RARAP10276 462 aa11□□□□□ -0.65
CHFR-219ENST00000541341 SCP2P22307 547 aa11□□□□□ -0.65
CHFR-219ENST00000541341 CALB2P22676 271 aa11□□□□□ -0.65
CHFR-219ENST00000541341 CCND2P30279 289 aa11□□□□□ -0.65
CHFR-219ENST00000541341 RFC2P35250 354 aa11□□□□□ -0.65
CHFR-219ENST00000541341 PSEN2P49810 448 aa11□□□□□ -0.65
CHFR-219ENST00000541341 YARSP54577 528 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 SLC12A3P55017 1021 aa11□□□□□ -0.65
CHFR-219ENST00000541341 NCALDP61601 193 aa11□□□□□ -0.65
CHFR-219ENST00000541341 MRPS9P82933 396 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 AUHQ13825 339 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 FYB2Q5VWT5 728 aa11□□□□□ -0.65
CHFR-219ENST00000541341 CCDC62Q6P9F0 684 aa11□□□□□ -0.65
CHFR-219ENST00000541341 LRRC8DQ7L1W4 858 aa11□□□□□ -0.65
CHFR-219ENST00000541341 ASRGL1Q7L266 308 aa11□□□□□ -0.65
CHFR-219ENST00000541341 NIPA1Q7RTP0 329 aa11□□□□□ -0.65
CHFR-219ENST00000541341 DDX42Q86XP3 938 aaKnown RBP eCLIP11□□□□□ -0.65
CHFR-219ENST00000541341 CCDC89Q8N998 374 aa11□□□□□ -0.65
CHFR-219ENST00000541341 PPFIBP2Q8ND30 876 aa11□□□□□ -0.65
CHFR-219ENST00000541341 IL31RAQ8NI17 732 aa11□□□□□ -0.65
CHFR-219ENST00000541341 MICAL1Q8TDZ2 1067 aa11□□□□□ -0.65
CHFR-219ENST00000541341 ATP8B4Q8TF62 1192 aa11□□□□□ -0.65
CHFR-219ENST00000541341 LRRC15Q8TF66 581 aa11□□□□□ -0.65
CHFR-219ENST00000541341 SLC35C1Q96A29 364 aa11□□□□□ -0.65
CHFR-219ENST00000541341 EEF2KMTQ96G04 330 aa11□□□□□ -0.65
CHFR-219ENST00000541341 SNF8Q96H20 258 aa11□□□□□ -0.65
CHFR-219ENST00000541341 CFAP57Q96MR6 1250 aa11□□□□□ -0.65
CHFR-219ENST00000541341 TIPINQ9BVW5 301 aa11□□□□□ -0.65
CHFR-219ENST00000541341 TRAIPQ9BWF2 469 aa11□□□□□ -0.65
CHFR-219ENST00000541341 PACSIN1Q9BY11 444 aa11□□□□□ -0.65
CHFR-219ENST00000541341 LRMDAQ9H2I8 198 aa11□□□□□ -0.65
CHFR-219ENST00000541341 TMEM206Q9H813 350 aa11□□□□□ -0.65
CHFR-219ENST00000541341 DCLRE1BQ9H816 532 aa11□□□□□ -0.65
CHFR-219ENST00000541341 SSU72Q9NP77 194 aaKnown RBP11□□□□□ -0.65
CHFR-219ENST00000541341 KCNMB3Q9NPA1 279 aa11□□□□□ -0.65
CHFR-219ENST00000541341 APEX2Q9UBZ4 518 aa11□□□□□ -0.65
CHFR-219ENST00000541341 UBIAD1Q9Y5Z9 338 aa11□□□□□ -0.65
CHFR-219ENST00000541341 ADGRA3Q8IWK6 1321 aa11□□□□□ -0.65
CHFR-219ENST00000541341 IGLV3-22A0A075B6J6 115 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 POTEMA6NI47 508 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 TRAFD1O14545 582 aaPredicted RBP10.99□□□□□ -0.65
CHFR-219ENST00000541341 KPNA6O60684 536 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 LPXNO60711 386 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 SMNDC1O75940 238 aaKnown RBP eCLIP10.99□□□□□ -0.655e-9■■□□□ 12.6
CHFR-219ENST00000541341 RGS20O76081 388 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 FAM13AO94988 1023 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 NPTXRO95502 500 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 TTC4O95801 387 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 MYBL1P10243 752 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 CKBP12277 381 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 SKIP12755 728 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 ACADSP16219 412 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 SLC9A1P19634 815 aa10.99□□□□□ -0.65
CHFR-219ENST00000541341 ICAM3P32942 547 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms