RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 A8MXQ7 604 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 TMEM189-UBE2V1I3L0A0 370 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 EFCAB14O75071 495 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 MYBL1P10243 752 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 ABCB4P21439 1286 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 CASQ1P31415 396 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 LHX1P48742 406 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 PHF13Q86YI8 300 aaPredicted RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 RHOT2Q8IXI1 618 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 PDCL2Q8N4E4 241 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 ZNF592Q92610 1267 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 TNIP3Q96KP6 325 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 CASD1Q96PB1 797 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 FAM193BQ96PV7 902 aaPredicted RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 MRPL9Q9BYD2 267 aaKnown RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 THAP2Q9H0W7 228 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 PRDM5Q9NQX1 630 aaPredicted RBP18.85■□□□□ 0.61
CLIP1-215ENST00000541108 GTF3C4Q9UKN8 822 aa18.85■□□□□ 0.61
CLIP1-215ENST00000541108 MICAL3Q7RTP6 2002 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 DDHD2O94830 711 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 CFHP08603 1231 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 ITGB8P26012 769 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 HADHBP55084 474 aaKnown RBP18.84■□□□□ 0.61
CLIP1-215ENST00000541108 NAP1L1P55209 391 aaKnown RBP18.84■□□□□ 0.61
CLIP1-215ENST00000541108 RNASELQ05823 741 aaKnown RBP18.84■□□□□ 0.61
CLIP1-215ENST00000541108 DSTYKQ6XUX3 929 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 DNAAF5Q86Y56 855 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 ZNF280BQ86YH2 543 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 MCOLN2Q8IZK6 566 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 SLC35F6Q8N357 371 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 CPA5Q8WXQ8 436 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 CACNG4Q9UBN1 327 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 DSEQ9UL01 958 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLIP1-215ENST00000541108 PCDHGC5Q9Y5F6 944 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 NCANO14594 1321 aa18.84■□□□□ 0.61
CLIP1-215ENST00000541108 M0QZQ0 153 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 O00370 1275 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 MOCS3O95396 460 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 TIGD5Q53EQ6 642 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 NAA35Q5VZE5 725 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 LCLAT1Q6UWP7 414 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 CD300LGQ6UXG3 332 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 SLC35G2Q8TBE7 412 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 NME7Q9Y5B8 376 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 CAPN6Q9Y6Q1 641 aa18.83■□□□□ 0.61
CLIP1-215ENST00000541108 BUB1O43683 1085 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 CYP11A1P05108 521 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 CYP1A2P05177 515 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 ODC1P11926 461 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 IGFBP6P24592 240 aaPredicted RBP18.82■□□□□ 0.6
CLIP1-215ENST00000541108 C1QBPQ07021 282 aaKnown RBP18.82■□□□□ 0.6
CLIP1-215ENST00000541108 WSCD1Q658N2 575 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 ARHGAP17Q68EM7 881 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 ACOT1Q86TX2 421 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 CTAGE9A4FU28 777 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 FANCGO15287 622 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 CAPN15O75808 1086 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 CSF2RAP15509 400 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 MMP8P22894 467 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 LMO2P25791 158 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 NOP2P46087 812 aaKnown RBP18.82■□□□□ 0.6
CLIP1-215ENST00000541108 ORC1Q13415 861 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 MON1BQ7L1V2 547 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 PASD1Q8IV76 773 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 WDTC1Q8N5D0 677 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 SUSD3Q96L08 255 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 AVENQ9NQS1 362 aaPredicted RBP18.82■□□□□ 0.6
CLIP1-215ENST00000541108 ADAM22Q9P0K1 906 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 UVRAGQ9P2Y5 699 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 JRKLQ9Y4A0 524 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 MYH10P35580 1976 aa18.82■□□□□ 0.6
CLIP1-215ENST00000541108 MTA2O94776 668 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 ALDH2P05091 517 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.81■□□□□ 0.6
CLIP1-215ENST00000541108 C12orf29Q8N999 325 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 UBE2Q2Q8WVN8 375 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 RABGGTAQ92696 567 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 TOP1MTQ969P6 601 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 ZNF653Q96CK0 615 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 ARHGEF26Q96DR7 871 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 NAPGQ99747 312 aaPredicted RBP18.81■□□□□ 0.6
CLIP1-215ENST00000541108 TSPAN16Q9UKR8 245 aa18.81■□□□□ 0.6
CLIP1-215ENST00000541108 LTBP2Q14767 1821 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 TRAPPC3O43617 180 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 BAIAP3O94812 1187 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 MICAL2O94851 1124 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 KIF4AO95239 1232 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 CALB1P05937 261 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 PDGFRBP09619 1106 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 TYMPP19971 482 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 GPD2P43304 727 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 PPP1R26Q5T8A7 1209 aaPredicted RBP18.8■□□□□ 0.6
CLIP1-215ENST00000541108 LIN9Q5TKA1 542 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 OSTM1Q86WC4 334 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 METTL23Q86XA0 190 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 SYCE1Q8N0S2 351 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 C1orf131Q8NDD1 294 aaKnown RBP18.8■□□□□ 0.6
CLIP1-215ENST00000541108 TPCN2Q8NHX9 752 aa18.8■□□□□ 0.6
CLIP1-215ENST00000541108 TMEM175Q9BSA9 504 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms