RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 BCL7CQ8WUZ0 217 aaPredicted RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 CPLX3Q8WVH0 158 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 PPP1R13BQ96KQ4 1090 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 CALR3Q96L12 384 aaKnown RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 CCDC42Q96M95 316 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 CHRDQ9H2X0 955 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 SMARCAD1Q9H4L7 1026 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 KMT5AQ9NQR1 393 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 RAXQ9Y2V3 346 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 IRAK3Q9Y616 596 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 EPN1Q9Y6I3 576 aaPredicted RBP9.02□□□□□ -0.97
CHD4-208ENST00000540960 F5P12259 2224 aa9.02□□□□□ -0.97
CHD4-208ENST00000540960 IGKV6D-21A0A0A0MT36 114 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 SSU72P8A0A1W2PR75 194 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 TTC26A0AVF1 554 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 MBLAC1A4D2B0 266 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 NCAM2O15394 837 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 ASAP2O43150 1006 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 KRT86O43790 486 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 PPP1R37O75864 691 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 LDHAP00338 332 aaKnown RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 CTSAP10619 480 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 NAMPTP43490 491 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 STAT5BP51692 787 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 NCKAP1LP55160 1127 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 CDC42EP1Q00587 391 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 PRKCEQ02156 737 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 TFDP1Q14186 410 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 GAS6Q14393 721 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 MXD4Q14582 209 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 EXOC3L4Q17RC7 722 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 MIIPQ5JXC2 388 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 E4F1Q66K89 784 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 RSPO2Q6UXX9 243 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 MAMSTRQ6ZN01 415 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 SLC24A5Q71RS6 500 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 CEP68Q76N32 757 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 TMEFF1Q8IYR6 380 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 XXYLT1Q8NBI6 393 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 DEFB124Q8NES8 71 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 HPS3Q969F9 1004 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 ZNF707Q96C28 371 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 STRA6Q9BX79 667 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 VN1R3Q9BXE9 311 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 TMEM117Q9H0C3 514 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 C2orf40Q9H1Z8 148 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 DEF6Q9H4E7 631 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 HAUS4Q9H6D7 363 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 CDHR5Q9HBB8 845 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 HEBP1Q9NRV9 189 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 AGPAT3Q9NRZ7 376 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 RGS18Q9NS28 235 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 DMAC2Q9NW81 257 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 C2orf42Q9NWW7 574 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 SEPT9Q9UHD8 586 aaPredicted RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 NDRG2Q9UN36 371 aaKnown RBP9.01□□□□□ -0.97
CHD4-208ENST00000540960 SQORQ9Y6N5 450 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 ABCA12Q86UK0 2595 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 COL12A1Q99715 3063 aa9.01□□□□□ -0.97
CHD4-208ENST00000540960 CCDC169A6NNP5 214 aa9□□□□□ -0.97
CHD4-208ENST00000540960 EIF3CLB5ME19 914 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 DYNC1I1O14576 645 aa9□□□□□ -0.97
CHD4-208ENST00000540960 INPPL1O15357 1258 aa9□□□□□ -0.97
CHD4-208ENST00000540960 MAGEB2O15479 319 aa9□□□□□ -0.97
CHD4-208ENST00000540960 EPN2O95208 641 aa9□□□□□ -0.97
CHD4-208ENST00000540960 SERPING1P05155 500 aa9□□□□□ -0.97
CHD4-208ENST00000540960 CNPP09543 421 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 GARTP22102 1010 aa9□□□□□ -0.97
CHD4-208ENST00000540960 KLRC2P26717 231 aa9□□□□□ -0.97
CHD4-208ENST00000540960 RAP1GAPP47736 663 aa9□□□□□ -0.97
CHD4-208ENST00000540960 AP3M2P53677 418 aa9□□□□□ -0.97
CHD4-208ENST00000540960 FAM189BP81408 668 aa9□□□□□ -0.97
CHD4-208ENST00000540960 KCNH2Q12809 1159 aa9□□□□□ -0.97
CHD4-208ENST00000540960 MAPK7Q13164 816 aa9□□□□□ -0.97
CHD4-208ENST00000540960 GRIK4Q16099 956 aa9□□□□□ -0.97
CHD4-208ENST00000540960 IFI16Q16666 785 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 SFMBT2Q5VUG0 894 aa9□□□□□ -0.97
CHD4-208ENST00000540960 IER5Q5VY09 327 aa9□□□□□ -0.97
CHD4-208ENST00000540960 ANO5Q75V66 913 aa9□□□□□ -0.97
CHD4-208ENST00000540960 CYFIP1Q7L576 1253 aa9□□□□□ -0.97
CHD4-208ENST00000540960 APBB1IPQ7Z5R6 666 aaPredicted RBP9□□□□□ -0.97
CHD4-208ENST00000540960 MTERF4Q7Z6M4 381 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 MAP4K3Q8IVH8 894 aa9□□□□□ -0.97
CHD4-208ENST00000540960 CHCHD4Q8N4Q1 142 aa9□□□□□ -0.97
CHD4-208ENST00000540960 CMASQ8NFW8 434 aaPredicted RBP9□□□□□ -0.97
CHD4-208ENST00000540960 DEPTORQ8TB45 409 aa9□□□□□ -0.97
CHD4-208ENST00000540960 TMC2Q8TDI7 906 aa9□□□□□ -0.97
CHD4-208ENST00000540960 SMG7Q92540 1137 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 C16orf45Q96MC5 204 aaPredicted RBP9□□□□□ -0.97
CHD4-208ENST00000540960 NELL2Q99435 816 aa9□□□□□ -0.97
CHD4-208ENST00000540960 EIF3CQ99613 913 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 EDEM2Q9BV94 578 aa9□□□□□ -0.97
CHD4-208ENST00000540960 CELF4Q9BZC1 486 aaKnown RBP9□□□□□ -0.97
CHD4-208ENST00000540960 CLMPQ9H6B4 373 aa9□□□□□ -0.97
CHD4-208ENST00000540960 TMEM134Q9H6X4 195 aa9□□□□□ -0.97
CHD4-208ENST00000540960 MAN1C1Q9NR34 630 aa9□□□□□ -0.97
CHD4-208ENST00000540960 TMEM161AQ9NX61 479 aa9□□□□□ -0.97
CHD4-208ENST00000540960 ZNF215Q9UL58 517 aaPredicted RBP9□□□□□ -0.97
CHD4-208ENST00000540960 TBX20Q9UMR3 447 aa9□□□□□ -0.97
CHD4-208ENST00000540960 SIK3Q9Y2K2 1263 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms