RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 XPO6Q96QU8 1125 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 DPP3Q9NY33 737 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 TPX2Q9ULW0 747 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 NEU2Q9Y3R4 380 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 SUN1O94901 812 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 LGALS2P05162 132 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 MYL3P08590 195 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 VDRP11473 427 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 FLT3P36888 993 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 COPS2P61201 443 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 YWHAGP61981 247 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 PTPN11Q06124 597 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 TMEM62Q0P6H9 643 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 DRP2Q13474 957 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 UBA3Q8TBC4 463 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ACSF2Q96CM8 615 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 PLCD4Q9BRC7 762 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 NEUROG2Q9H2A3 272 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 METTL5Q9NRN9 209 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 POLIQ9UNA4 740 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 COL11A2P13942 1736 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 QSER1Q2KHR3 1735 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 A8MXQ7 604 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 RASA4BC9J798 803 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 GOLGA8MH3BSY2 632 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 RASA4O43374 803 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CST8O60676 142 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CST3P01034 146 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 PEX5P50542 639 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 FSTL1Q12841 308 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 NR1H3Q13133 447 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 TFDP3Q5H9I0 405 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CDC42EP4Q9H3Q1 356 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 KLHL14Q9P2G3 628 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 LACTBL1A8MY62 500 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 CDH16O75309 829 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF286BP0CG31 522 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 UNGP13051 313 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PDIA2Q13087 525 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 SMTNL2Q2TAL5 461 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 Q3C1V9 767 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 HP1BP3Q5SSJ5 553 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 DCAF12L1Q5VU92 463 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 EEF1DP3Q658K8 133 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 SPOCD1Q6ZMY3 1216 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TMEM174Q8WUU8 243 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TMEM176AQ96HP8 235 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TRIM7Q9C029 511 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 CDT1Q9H211 546 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 APOBEC3GQ9HC16 384 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 KIAA1257Q9ULG3 409 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TELO2Q9Y4R8 837 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 CAPN9O14815 690 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 GJB1P08034 283 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ATP4AP20648 1035 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 MSH2P43246 934 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 MAGEA4P43358 317 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 CDH8P55286 799 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ATP11AP98196 1134 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PPP6R3Q5H9R7 873 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 LLGL2Q6P1M3 1020 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TAS1R3Q7RTX0 852 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TADA2BQ86TJ2 420 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ZBED8Q8IZ13 594 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 SHCBP1Q8NEM2 672 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PPP1R14CQ8TAE6 165 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 FBXO41Q8TF61 875 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ELAC2Q9BQ52 826 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PDGFCQ9NRA1 345 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 NOD1Q9Y239 953 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 STYXL1Q9Y6J8 313 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PIK3R2O00459 728 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 B4GALT5O43286 388 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 RIPK2O43353 540 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 ZBED1O96006 694 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 CYP1A1P04798 512 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PAEPP09466 180 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 GNAT1P11488 350 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 RGS7P49802 495 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 EIF3EP60228 445 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 SARNPP82979 210 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TCEAL1Q15170 157 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 FYB2Q5VWT5 728 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 RSPH3Q86UC2 560 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 GDAP1Q8TB36 358 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 MYCBPAPQ8TBZ2 947 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 MDM1Q8TC05 714 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 EPS8L3Q8TE67 593 aaKnown RBP11.35□□□□□ -0.59
CLIP1-213ENST00000540338 SERPINB12Q96P63 405 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 PDLIM7Q9NR12 457 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 TXNDC16Q9P2K2 825 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 UMODL1Q5DID0 1318 aa11.35□□□□□ -0.59
CLIP1-213ENST00000540338 MYH11P35749 1972 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 CDK5RAP2Q96SN8 1893 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 VNN1O95497 513 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 NPTXRO95502 500 aa11.34□□□□□ -0.59
CLIP1-213ENST00000540338 CYP2C9P11712 490 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms