RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TNFSF9P41273 254 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 CTCFP49711 727 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 SLC8A3P57103 927 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 NOP14P78316 857 aaKnown RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 RIPK1Q13546 671 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 PTK6Q13882 451 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 PKN2Q16513 984 aaKnown RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 WDR44Q5JSH3 913 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 TMEM63BQ5T3F8 832 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 APBB1IPQ7Z5R6 666 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 ANKMY2Q8IV38 441 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 UCMAQ8WVF2 138 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 TEX13BQ9BXU2 312 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 STMN4Q9H169 189 aaPredicted RBP13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 ACAD9Q9H845 621 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 NPHS2Q9NP85 383 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 PHTF1Q9UMS5 762 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 PCDHB4Q9Y5E5 795 aa13.27□□□□□ -0.29
SFSWAP-208ENST00000539506 A0A0B4J269 797 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 OAZ1P54368 228 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ENPEPQ07075 957 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 POTEAQ6S8J7 498 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ZNF677Q86XU0 584 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 FAM13CQ8NE31 585 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 C12orf42Q96LP6 360 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 SAYSD1Q9NPB0 183 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 K7ERI5 159 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 OATP04181 439 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 GNA15P30679 374 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 RPA3P35244 121 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 SARNPP82979 210 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ZNF252P-AS1Q0IIN9 211 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 DALRD3Q5D0E6 543 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ANGEL2Q5VTE6 544 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ARMC3Q5W041 872 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 MFSD5Q6N075 450 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ASRGL1Q7L266 308 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 SNF8Q96H20 258 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 RUNDC3BQ96NL0 473 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 TBC1D10AQ9BXI6 508 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 VPS37BQ9H9H4 285 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 UBN1Q9NPG3 1134 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ZNF302Q9NR11 478 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 PICK1Q9NRD5 415 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ATP2A1O14983 1001 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 SMIM24O75264 130 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 UNC5CO95185 931 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 IFNB1P01574 187 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 FGFR1P11362 822 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 HARSP12081 509 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 ITIH2P19823 946 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 SLC1A1P43005 524 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 STRN3Q13033 797 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 TAF1BQ53T94 588 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 RNF220Q5VTB9 566 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 PLEKHA7Q6IQ23 1121 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 TRMT10CQ7L0Y3 403 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 TMEM130Q8N3G9 435 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 RBBP8NLQ8NC74 664 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 PRR11Q96HE9 360 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 LRRC37BQ96QE4 947 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 MSTO1Q9BUK6 570 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 CNTN6Q9UQ52 1028 aa13.26□□□□□ -0.29
SFSWAP-208ENST00000539506 MYH9P35579 1960 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 FAM189A1O60320 539 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 PIGRP01833 764 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 CPA2P48052 419 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 CAPSQ13938 189 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 PRKG1Q13976 671 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 SLC1A5Q15758 541 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 IZUMO3Q5VZ72 239 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 TXNRD3NBQ6F5E7 133 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 ANO7Q6IWH7 933 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 FBF1Q8TES7 1133 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 DDX50Q9BQ39 737 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 SYT15Q9BQS2 421 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 FHDC1Q9C0D6 1143 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 PRKAG3Q9UGI9 489 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 EXOC1LA0A1B0GW35 172 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 DKC1O60832 514 aaKnown RBP eCLIP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 ZBTB7AO95365 584 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 CA4P22748 312 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 RPS12P25398 132 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 NAMPTP43490 491 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 MXRA7P84157 204 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 GAD2Q05329 585 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 EFTUD2Q15029 972 aaKnown RBP eCLIP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 SETDB1Q15047 1291 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 P3H1Q32P28 736 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 MDH1BQ5I0G3 518 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 ZNF365Q70YC5 407 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 MTDHQ86UE4 582 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 ATL2Q8NHH9 583 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 TRPM4Q8TD43 1214 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 KLRG1Q96E93 195 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 RBM15Q96T37 977 aaKnown RBP eCLIP13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 CCDC134Q9H6E4 229 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 KIAA1586Q9HCI6 787 aa13.25□□□□□ -0.29
SFSWAP-208ENST00000539506 SSC5DA1L4H1 1573 aa13.24□□□□□ -0.29
SFSWAP-208ENST00000539506 IGKV6D-21A0A0A0MT36 114 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms