RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 FAM228BP0C875 321 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 VDRP11473 427 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 SYN1P17600 705 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 GNL1P36915 607 aaPredicted RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 LHX1P48742 406 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 SLC11A1P49279 550 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 FMO1Q01740 532 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 GFPT1Q06210 699 aaPredicted RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ELAVL2Q12926 359 aaKnown RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 STILQ15468 1287 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 TIGD5Q53EQ6 642 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ZNF394Q53GI3 561 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 PPP1R2P3Q6NXS1 205 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ALKBH5Q6P6C2 394 aaKnown RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 METTL23Q86XA0 190 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 GLYCTKQ8IVS8 523 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 SLC4A11Q8NBS3 891 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 LNX1Q8TBB1 728 aaPredicted RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 PHOSPHO2Q8TCD6 241 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 SLC20A1Q8WUM9 679 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 TWNKQ96RR1 684 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 SLC9A7Q96T83 725 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ELOVL4Q9GZR5 314 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 DNAJB4Q9UDY4 337 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 NAGPAQ9UK23 515 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ADAM28Q9UKQ2 775 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 ZMYND8Q9ULU4 1186 aaPredicted RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 NENFQ9UMX5 172 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 STXBP5LQ9Y2K9 1186 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 FAN1Q9Y2M0 1017 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 PPP2R2CQ9Y2T4 447 aa11.34□□□□□ -0.59
LEMD3-202ENST00000539442 PRG3Q9Y2Y8 225 aaPredicted RBP11.34□□□□□ -0.59
LEMD3-202ENST00000539442 COL4A6Q14031 1691 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ESPNB1AK53 854 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF263O14978 683 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 SYN3O14994 580 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 TADA2AO75478 443 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 GJB5O95377 273 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 LSM8O95777 96 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 MMEP08473 750 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 GZMAP12544 262 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CD19P15391 556 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CHRNB2P17787 502 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 LAG3P18627 525 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PCSK1P29120 753 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PBX2P40425 430 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 BRCC3P46736 316 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ALDH7A1P49419 539 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 VAV2P52735 878 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 EPHB4P54760 987 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 BCAR1P56945 870 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 HTRA4P83105 476 aaPredicted RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PAN2Q504Q3 1202 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 SGO2Q562F6 1265 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CCDC122Q5T0U0 273 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 TAF3Q5VWG9 929 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 WSCD1Q658N2 575 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF662Q6ZS27 426 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 TNS4Q8IZW8 715 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CCAR2Q8N163 923 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CRYBG2Q8N1P7 616 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ACRBPQ8NEB7 543 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF606Q8WXB4 792 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 RABGGTAQ92696 567 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 TNIP3Q96KP6 325 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 YME1L1Q96TA2 773 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 DESI2Q9BSY9 194 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PDCL3Q9H2J4 239 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CWH43Q9H720 699 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 ACP6Q9NPH0 428 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 SEPT11Q9NVA2 429 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 HMGXB4Q9UGU5 601 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PUF60Q9UHX1 559 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 INTUQ9ULD6 942 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 PCDHGC3Q9UN70 934 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 REXO2Q9Y3B8 237 aaKnown RBP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 CEP83Q9Y592 693 aa11.33□□□□□ -0.6
LEMD3-202ENST00000539442 SF3B1O75533 1304 aaKnown RBP eCLIP11.33□□□□□ -0.6
LEMD3-202ENST00000539442 FNDC1Q4ZHG4 1894 aaPredicted RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 CYP1A1P04798 512 aaPredicted RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 ITGB1P05556 798 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 BRD2P25440 801 aaKnown RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 MAGEA1P43355 309 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 CYP27A1Q02318 531 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 BTG3Q14201 252 aaPredicted RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 CNGA2Q16280 664 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 RASIP1Q5U651 963 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 ARHGAP17Q68EM7 881 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 KIAA1328Q86T90 577 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 OSTM1Q86WC4 334 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 HASPINQ8TF76 798 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 HEXIM2Q96MH2 286 aaKnown RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 TSGA10Q9BZW7 698 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 ZNF518BQ9C0D4 1074 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 ISCUQ9H1K1 167 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 MARCH5Q9NX47 278 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 DDX43Q9NXZ2 648 aaKnown RBP11.32□□□□□ -0.6
LEMD3-202ENST00000539442 CDH9Q9ULB4 789 aa11.32□□□□□ -0.6
LEMD3-202ENST00000539442 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms