RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 STIM1Q13586 685 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 INTS6LQ5JSJ4 861 aaKnown RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 POTEHQ6S545 545 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 FILIP1Q7Z7B0 1213 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 PLCD3Q8N3E9 789 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 GPT2Q8TD30 523 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 TAS1R2Q8TE23 839 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 C2orf15Q8WU43 125 aaKnown RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 TAF4BQ92750 862 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 GBP4Q96PP9 640 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 MYADMQ96S97 322 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 TSG101Q99816 390 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 MRPL45Q9BRJ2 306 aaKnown RBP13.91□□□□□ -0.18
VPS28-216ENST00000533806 LRRC3Q9BY71 257 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 EPHX3Q9H6B9 360 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.91□□□□□ -0.182e-7■■■■□ 26
VPS28-216ENST00000533806 SLC27A5Q9Y2P5 690 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 C2orf16Q68DN1 1984 aa13.91□□□□□ -0.18
VPS28-216ENST00000533806 MYBPHLA2RUH7 354 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 PHACTR2O75167 634 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 MICAL2O94851 1124 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 LRG1P02750 347 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 RHOP08100 348 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 KRT13P13646 458 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 PTPN2P17706 415 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 ACAT1P24752 427 aaKnown RBP13.9□□□□□ -0.18
VPS28-216ENST00000533806 MYL7Q01449 175 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 BIRC3Q13489 604 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 CCDC142Q17RM4 750 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 SLC5A9Q2M3M2 681 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 SGSM1Q2NKQ1 1148 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 PABPC1LQ4VXU2 614 aaKnown RBP13.9□□□□□ -0.18
VPS28-216ENST00000533806 PRSS36Q5K4E3 855 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 DCP1BQ8IZD4 617 aaKnown RBP13.9□□□□□ -0.18
VPS28-216ENST00000533806 TDRD5Q8NAT2 981 aaKnown RBP13.9□□□□□ -0.18
VPS28-216ENST00000533806 ITFG1Q8TB96 612 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 SPPL2BQ8TCT7 592 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 NELFBQ8WX92 580 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 ELMO3Q96BJ8 720 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 ACSF2Q96CM8 615 aaPredicted RBP13.9□□□□□ -0.18
VPS28-216ENST00000533806 CEP63Q96MT8 703 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 MMS19Q96T76 1030 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 TMEM8AQ9HCN3 771 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 CRTAC1Q9NQ79 661 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 MUTYHQ9UIF7 546 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 GTF3C4Q9UKN8 822 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 POLIQ9UNA4 740 aa13.9□□□□□ -0.18
VPS28-216ENST00000533806 ANHXE9PGG2 379 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 DCXO43602 365 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 ATP2C2O75185 946 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 LRRN2O75325 713 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 MOSPD3O75425 235 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 SOAT2O75908 522 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 HAPLN1P10915 354 aaPredicted RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 EPB41P11171 864 aaKnown RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 LAMP2P13473 410 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 ATF6P18850 670 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 FSHRP23945 695 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 PCSK1P29120 753 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 GNL1P36915 607 aaPredicted RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 CCR2P41597 374 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 TUFMP49411 452 aaKnown RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 NFE2Q16621 373 aaPredicted RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 ZNF699Q32M78 642 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 CFAP221Q4G0U5 840 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 KRT39Q6A163 491 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 KLHL10Q6JEL2 608 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 FRMD5Q7Z6J6 570 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 TMC8Q8IU68 726 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 FGF13Q92913 245 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 SLC35C1Q96A29 364 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 SDCBP2Q9H190 292 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 APOBEC3GQ9HC16 384 aaKnown RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 ABCB6Q9NP58 842 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 C11orf16Q9NQ32 467 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 NXF1Q9UBU9 619 aaKnown RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 LIMD1Q9UGP4 676 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 CDH9Q9ULB4 789 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 CDH7Q9ULB5 785 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 COQ4Q9Y3A0 265 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 PCDHB5Q9Y5E4 795 aa13.89□□□□□ -0.19
VPS28-216ENST00000533806 ZFP37Q9Y6Q3 630 aaPredicted RBP13.89□□□□□ -0.19
VPS28-216ENST00000533806 NOTCH4Q99466 2003 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 BICDL2A1A5D9 508 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 PMM2O15305 246 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ALADP13716 330 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ASPAP45381 313 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CDR1P51861 262 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CDH8P55286 799 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 MARSP56192 900 aaKnown RBP13.88□□□□□ -0.19
VPS28-216ENST00000533806 TNNC1P63316 161 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 TSPY1Q01534 308 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 PAK1Q13153 545 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 PTPN21Q16825 1174 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CBWD6Q4V339 395 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 ZNF667Q5HYK9 610 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CBWD3Q5JTY5 395 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 CBWD5Q5RIA9 395 aa13.88□□□□□ -0.19
VPS28-216ENST00000533806 RBM43Q6ZSC3 357 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms