RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MLLT6P55198 1093 aaPredicted RBP15.87■□□□□ 0.13
VPS28-215ENST00000531924 FCHO2Q0JRZ9 810 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 BFSP1Q12934 665 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 NFE2Q16621 373 aaPredicted RBP15.87■□□□□ 0.13
VPS28-215ENST00000531924 ERMP1Q7Z2K6 904 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 BRSK2Q8IWQ3 736 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 CSGALNACT2Q8N6G5 542 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 RSPRY1Q96DX4 576 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 ZNF396Q96N95 335 aaPredicted RBP15.87■□□□□ 0.13
VPS28-215ENST00000531924 STRA6Q9BX79 667 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 PRMT8Q9NR22 394 aaPredicted RBP15.87■□□□□ 0.13
VPS28-215ENST00000531924 ZMYM5Q9UJ78 669 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 RAB23Q9ULC3 237 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 MTMR6Q9Y217 621 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 MIA3Q5JRA6 1907 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 GVINP1Q7Z2Y8 2422 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 PRPF40AO75400 957 aaKnown RBP15.86■□□□□ 0.13
VPS28-215ENST00000531924 TMEM191BP0C7N4 346 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 HAPLN1P10915 354 aaPredicted RBP15.86■□□□□ 0.13
VPS28-215ENST00000531924 ATF6P18850 670 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 CASP5P51878 434 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 RBP5P82980 135 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 CYP4F8P98187 520 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 PLCB2Q00722 1185 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 AMPD3Q01432 767 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 MYL7Q01449 175 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 FZD5Q13467 585 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 DCLK2Q8N568 766 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 SUMF1Q8NBK3 374 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 ZBTB44Q8NCP5 570 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 TTC8Q8TAM2 541 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 BPIFB1Q8TDL5 484 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 PCIF1Q9H4Z3 704 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 OBP2AQ9NY56 170 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 ITGA11Q9UKX5 1188 aa15.86■□□□□ 0.13
VPS28-215ENST00000531924 SPTBN4Q9H254 2564 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 SHISA7A6NL88 538 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 K7ELQ4 463 aaPredicted RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 KIAA0391O15091 583 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 PRPF6O94906 941 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 AVPR1AP37288 418 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 CXCL12P48061 93 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 RPL10AP62906 217 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 MYO1EQ12965 1108 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 LRRTM3Q86VH5 581 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 RALGPS2Q86X27 583 aaPredicted RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 TMEM86AQ8N2M4 240 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 PDCL2Q8N4E4 241 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 GPR161Q8N6U8 529 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 CELF5Q8N6W0 485 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 LRRC52Q8N7C0 313 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 ANKRD36BP1Q96IX9 119 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 ZFYVE19Q96K21 471 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 CBWD1Q9BRT8 395 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 PI4K2AQ9BTU6 479 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 DDX43Q9NXZ2 648 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 MAGED2Q9UNF1 606 aaPredicted RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 SMG5Q9UPR3 1016 aaKnown RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 SNX9Q9Y5X1 595 aa15.85■□□□□ 0.13
VPS28-215ENST00000531924 MORC2Q9Y6X9 1032 aaPredicted RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 EP300Q09472 2414 aaPredicted RBP15.85■□□□□ 0.13
VPS28-215ENST00000531924 DMDP11532 3685 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 ZNF292O60281 2723 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 SPECC1L-ADORA2AF8WAN1 911 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 ARNTLO00327 626 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 SPTLC2O15270 562 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 TNNC2P02585 160 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 HSP90AA1P07900 732 aaKnown RBP15.84■□□□□ 0.13
VPS28-215ENST00000531924 CHRNB1P11230 501 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 DDX6P26196 483 aaKnown RBP eCLIP15.84■□□□□ 0.13
VPS28-215ENST00000531924 SOX9P48436 509 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 SURF1Q15526 300 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 DGKKQ5KSL6 1271 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 CC2D1AQ6P1N0 951 aaPredicted RBP15.84■□□□□ 0.13
VPS28-215ENST00000531924 MAMSTRQ6ZN01 415 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 ZNF687Q8N1G0 1237 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 GPD1LQ8N335 351 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 C1orf127Q8N9H9 656 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 MRPS31Q92665 395 aaKnown RBP15.84■□□□□ 0.13
VPS28-215ENST00000531924 ACBD6Q9BR61 282 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 MKNK1Q9BUB5 465 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 SMG9Q9H0W8 520 aaKnown RBP15.84■□□□□ 0.13
VPS28-215ENST00000531924 EPC1Q9H2F5 836 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 TNMDQ9H2S6 317 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 PDE11AQ9HCR9 933 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 GTSE1Q9NYZ3 720 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 GMEB2Q9UKD1 530 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 NCANO14594 1321 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 CACNA1IQ9P0X4 2223 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 FRYLO94915 3013 aa15.84■□□□□ 0.13
VPS28-215ENST00000531924 A0A087X0B3 334 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 FRMD3A2A2Y4 597 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 MYBPHLA2RUH7 354 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 ZNF233A6NK53 670 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 PRAMEF12O95522 483 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 CSH1P0DML2 217 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 CSH2P0DML3 217 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 ACAT1P24752 427 aaKnown RBP15.83■□□□□ 0.12
VPS28-215ENST00000531924 PCSK1P29120 753 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 WEE1P30291 646 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms