RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LRRTM3Q86VH5 581 aa25.49■■□□□ 1.67
CPSF1-202ENST00000527827 TMX3Q96JJ7 454 aa25.49■■□□□ 1.67
CPSF1-202ENST00000527827 SLC46A2Q9BY10 475 aa25.49■■□□□ 1.67
CPSF1-202ENST00000527827 ZHX3Q9H4I2 956 aa25.49■■□□□ 1.67
CPSF1-202ENST00000527827 C2CD2Q9Y426 696 aa25.49■■□□□ 1.67
CPSF1-202ENST00000527827 KMT2BQ9UMN6 2715 aaPredicted RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 ZNF638Q14966 1978 aaKnown RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 LOC105378220A0A1B0GUY1 285 aaPredicted RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 CYB561D2O14569 222 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 KARSQ15046 597 aaKnown RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 PRR23CQ6ZRP0 262 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 SYNPOQ8N3V7 929 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 GIPC2Q8TF65 315 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 PYM1Q9BRP8 204 aaKnown RBP25.48■■□□□ 1.67
CPSF1-202ENST00000527827 STYXL1Q9Y6J8 313 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 OBSL1O75147 1896 aa25.48■■□□□ 1.67
CPSF1-202ENST00000527827 KRT18P05783 430 aaKnown RBP25.47■■□□□ 1.67
CPSF1-202ENST00000527827 HAPLN1P10915 354 aaPredicted RBP25.47■■□□□ 1.67
CPSF1-202ENST00000527827 TAF6P49848 677 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 ITPRIPL2Q3MIP1 535 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 WSCD1Q658N2 575 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 ADALQ6DHV7 355 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 TMEM150AQ86TG1 271 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 WDR5BQ86VZ2 330 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 METTL23Q86XA0 190 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 C2orf15Q8WU43 125 aaKnown RBP25.47■■□□□ 1.67
CPSF1-202ENST00000527827 CCSER1Q9C0I3 900 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 IKZF4Q9H2S9 585 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 DPP3Q9NY33 737 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 SPAG17Q6Q759 2223 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 SDK1Q7Z5N4 2213 aa25.47■■□□□ 1.67
CPSF1-202ENST00000527827 ATG2BQ96BY7 2078 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 TBCAO75347 108 aaKnown RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 CD2BP2O95400 341 aaKnown RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 ABCD1P33897 745 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 MCM2P49736 904 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 PKN3Q6P5Z2 889 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 CRELD2Q6UXH1 353 aaPredicted RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 CMTM8Q8IZV2 173 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 THEM5Q8N1Q8 247 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 FAM160A2Q8N612 972 aaPredicted RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 SPPL2BQ8TCT7 592 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 GCNAQ96QF7 691 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 ST6GALNAC4Q9H4F1 302 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 GKN1Q9NS71 199 aa25.46■■□□□ 1.67
CPSF1-202ENST00000527827 THG1LQ9NWX6 298 aaKnown RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 AGO2Q9UKV8 859 aaKnown RBP25.46■■□□□ 1.67
CPSF1-202ENST00000527827 GREB1Q4ZG55 1949 aa25.45■■□□□ 1.67
CPSF1-202ENST00000527827 EXTL3O43909 919 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 GDF9O60383 454 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 ADRB1P08588 477 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 LONP1P36776 959 aaKnown RBP25.45■■□□□ 1.66
CPSF1-202ENST00000527827 SMARCB1Q12824 385 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 SLFN12LQ6IEE8 588 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 EFCAB13Q8IY85 973 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 LARP4BQ92615 738 aaKnown RBP25.45■■□□□ 1.66
CPSF1-202ENST00000527827 CHFRQ96EP1 664 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 FAM83CQ9BQN1 747 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 HPS4Q9NQG7 708 aa25.45■■□□□ 1.66
CPSF1-202ENST00000527827 ABI2Q9NYB9 513 aaPredicted RBP25.45■■□□□ 1.66
CPSF1-202ENST00000527827 HMGA1P17096 107 aaKnown RBP25.44■■□□□ 1.66
CPSF1-202ENST00000527827 POU5F1Q01860 360 aaKnown RBP25.44■■□□□ 1.66
CPSF1-202ENST00000527827 TAF12Q16514 161 aa25.44■■□□□ 1.66
CPSF1-202ENST00000527827 PPM1JQ5JR12 505 aa25.44■■□□□ 1.66
CPSF1-202ENST00000527827 CEP68Q76N32 757 aa25.44■■□□□ 1.66
CPSF1-202ENST00000527827 TMLHEQ9NVH6 421 aa25.44■■□□□ 1.66
CPSF1-202ENST00000527827 CCL26Q9Y258 94 aa25.44■■□□□ 1.66
CPSF1-202ENST00000527827 OTOL1A6NHN0 477 aaPredicted RBP25.43■■□□□ 1.66
CPSF1-202ENST00000527827 F11P03951 625 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 ADSSP30520 456 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 NLRP12P59046 1061 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 TMEM196Q5HYL7 178 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 RASSF8Q8NHQ8 419 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 USP13Q92995 863 aaPredicted RBP25.43■■□□□ 1.66
CPSF1-202ENST00000527827 ZMYM5Q9UJ78 669 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 EML5Q05BV3 1969 aa25.43■■□□□ 1.66
CPSF1-202ENST00000527827 KPNA7A9QM74 516 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 KRT37O76014 449 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 DDIT3P35638 169 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 RUNX3Q13761 415 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 TRIM68Q6AZZ1 485 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 FSTL4Q6MZW2 842 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 ZNF720Q7Z2F6 126 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 DCP1BQ8IZD4 617 aaKnown RBP25.42■■□□□ 1.66
CPSF1-202ENST00000527827 MAB21L3Q8N8X9 362 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 RIN3Q8TB24 985 aa25.42■■□□□ 1.66
CPSF1-202ENST00000527827 PPP1R37O75864 691 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 BMP15O95972 392 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 PXNP49023 591 aaPredicted RBP25.41■■□□□ 1.66
CPSF1-202ENST00000527827 GPR15P49685 360 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 WNT7BP56706 349 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 PTPAQ15257 358 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 SV2CQ496J9 727 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 SFR1Q86XK3 245 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 STKLD1Q8NE28 680 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 POMGNT1Q8WZA1 660 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 EBF3Q9H4W6 596 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 PCDHB5Q9Y5E4 795 aa25.41■■□□□ 1.66
CPSF1-202ENST00000527827 CNOT1A5YKK6 2376 aaKnown RBP25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms