RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ZNF653Q96CK0 615 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 PRDM5Q9NQX1 630 aaPredicted RBP22.34■■□□□ 1.17
VPS28-208ENST00000527797 TBC1D13Q9NVG8 400 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 GTF3C4Q9UKN8 822 aa22.34■■□□□ 1.17
VPS28-208ENST00000527797 KIAA0355O15063 1070 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 CYP1A2P05177 515 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 CDH5P33151 784 aaPredicted RBP22.33■■□□□ 1.17
VPS28-208ENST00000527797 AARSP49588 968 aaKnown RBP eCLIP22.33■■□□□ 1.171e-6■■■■■ 36.1
VPS28-208ENST00000527797 DSC1Q08554 894 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 TCEAL1Q15170 157 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 ACOT1Q86TX2 421 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 TMEM86AQ8N2M4 240 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 VCPIP1Q96JH7 1222 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 CALR3Q96L12 384 aaKnown RBP22.33■■□□□ 1.17
VPS28-208ENST00000527797 CTTNBP2NLQ9P2B4 639 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.33■■□□□ 1.17
VPS28-208ENST00000527797 STXBP5LQ9Y2K9 1186 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 PCDHGC5Q9Y5F6 944 aa22.33■■□□□ 1.17
VPS28-208ENST00000527797 TANC1Q9C0D5 1861 aa22.33■■□□□ 1.16
VPS28-208ENST00000527797 DNAH12Q6ZR08 3092 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 TRIM43BA6NCK2 446 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 O00370 1275 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 PALMO75781 387 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 URI1O94763 535 aaPredicted RBP22.32■■□□□ 1.16
VPS28-208ENST00000527797 DDHD2O94830 711 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 WSCD1Q658N2 575 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 DENND1BQ6P3S1 775 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 ZNF280BQ86YH2 543 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 NPAS4Q8IUM7 802 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 CRYBG2Q8N1P7 616 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 C1orf131Q8NDD1 294 aaKnown RBP22.32■■□□□ 1.16
VPS28-208ENST00000527797 TRIM43Q96BQ3 446 aaPredicted RBP22.32■■□□□ 1.16
VPS28-208ENST00000527797 ADAM22Q9P0K1 906 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 JRKLQ9Y4A0 524 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 NME7Q9Y5B8 376 aa22.32■■□□□ 1.16
VPS28-208ENST00000527797 MICAL2O94851 1124 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 PDGFRBP09619 1106 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 RAG1P15918 1043 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 C1QBPQ07021 282 aaKnown RBP22.31■■□□□ 1.16
VPS28-208ENST00000527797 TIGD5Q53EQ6 642 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 LIN9Q5TKA1 542 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 LCLAT1Q6UWP7 414 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 MON1BQ7L1V2 547 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 COLGALT2Q8IYK4 626 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 CRIPAKQ8N1N5 446 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 TPCN2Q8NHX9 752 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 RSPH1Q8WYR4 309 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 TNIP3Q96KP6 325 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 CASD1Q96PB1 797 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 OSGEPQ9NPF4 335 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 CNOT8Q9UFF9 292 aaKnown RBP22.31■■□□□ 1.16
VPS28-208ENST00000527797 GABRDO14764 452 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 EN2P19622 333 aaPredicted RBP22.31■■□□□ 1.16
VPS28-208ENST00000527797 LMO2P25791 158 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 LHX1P48742 406 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 CD300LGQ6UXG3 332 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 OSTM1Q86WC4 334 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 WDTC1Q8N5D0 677 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 C11orf70Q9BRQ4 267 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 DPEP3Q9H4B8 488 aa22.31■■□□□ 1.16
VPS28-208ENST00000527797 GRID2IPA4D2P6 1211 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 M0QYV0 167 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 ATMINO43313 823 aaPredicted RBP22.3■■□□□ 1.16
VPS28-208ENST00000527797 ODC1P11926 461 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 MMP8P22894 467 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 HADHBP55084 474 aaKnown RBP22.3■■□□□ 1.16
VPS28-208ENST00000527797 MMS22LQ6ZRQ5 1243 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 ERICH1Q86X53 443 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 TMEM199Q8N511 208 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 C12orf29Q8N999 325 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 MRPL9Q9BYD2 267 aaKnown RBP22.3■■□□□ 1.16
VPS28-208ENST00000527797 AVENQ9NQS1 362 aaPredicted RBP22.3■■□□□ 1.16
VPS28-208ENST00000527797 UVRAGQ9P2Y5 699 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 COG5Q9UP83 839 aa22.3■■□□□ 1.16
VPS28-208ENST00000527797 ARHGEF37A1IGU5 675 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 ENC1O14682 589 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 HCRTO43612 131 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 ATP1A1P05023 1023 aaKnown RBP22.29■■□□□ 1.16
VPS28-208ENST00000527797 CALB1P05937 261 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 ITGB8P26012 769 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 BRCC3P46736 316 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 PAN2Q504Q3 1202 aaKnown RBP22.29■■□□□ 1.16
VPS28-208ENST00000527797 PPP1R26Q5T8A7 1209 aaPredicted RBP22.29■■□□□ 1.16
VPS28-208ENST00000527797 ARHGAP17Q68EM7 881 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 UBE2Q1Q7Z7E8 422 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 METTL23Q86XA0 190 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 SYCE1Q8N0S2 351 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 SPATA18Q8TC71 538 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 VWCEQ96DN2 955 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 NUP85Q9BW27 656 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 TSPAN16Q9UKR8 245 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 DSEQ9UL01 958 aa22.29■■□□□ 1.16
VPS28-208ENST00000527797 ABHD14A-ACY1A0A1B0GW23 586 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 M0QZQ0 153 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 B4GALT3O60512 393 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 MTA2O94776 668 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 KIF4AO95239 1232 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 RRM1P23921 792 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 OR1G1P47890 313 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 GATMP50440 423 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms