RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PALM2Q8IXS6 379 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 MTMR14Q8NCE2 650 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 RFWD2Q8NHY2 731 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 LMO3Q8TAP4 145 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 DHX38Q92620 1227 aaKnown RBP10.16□□□□□ -0.78
VCAN-210ENST00000513960 INPP5DQ92835 1189 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 SYT11Q9BT88 431 aa10.16□□□□□ -0.78
VCAN-210ENST00000513960 MAP3K20Q9NYL2 800 aaKnown RBP10.16□□□□□ -0.78
VCAN-210ENST00000513960 MYH11P35749 1972 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 LYPLA2O95372 231 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 SERPINB6P35237 376 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 EN1Q05925 392 aaPredicted RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 CXCL9Q07325 125 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 MCL1Q07820 350 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 MTMR2Q13614 643 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 ACSBG2Q5FVE4 666 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 PLA2G4FQ68DD2 849 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 C4orf50Q6ZRC1 276 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 RGS9BPQ6ZS82 235 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 LRRC6Q86X45 466 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 ST13P4Q8IZP2 240 aaPredicted RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 DDX27Q96GQ7 796 aaKnown RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 NSL1Q96IY1 281 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 ZNF333Q96JL9 665 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 FAM84AQ96KN4 292 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 PCDHB18PQ96TA0 734 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 TMEM109Q9BVC6 243 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 SLC38A10Q9HBR0 1119 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 KRT10P13645 584 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 ETS1P14921 441 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 ARSEP51690 589 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 NEK3P51956 506 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 MAP7Q14244 749 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 PGM5Q15124 567 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 SNRNP35Q16560 246 aaKnown RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 CIAPIN1Q6FI81 312 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 C11orf63Q6NUN7 778 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 NOP9Q86U38 636 aaKnown RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 ZNF75CPQ92670 426 aaPredicted RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 ANKRD27Q96NW4 1050 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 NDNQ99608 321 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 C11orf70Q9BRQ4 267 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 CADM1Q9BY67 442 aaKnown RBP10.15□□□□□ -0.78
VCAN-210ENST00000513960 SHCBP1LQ9BZQ2 653 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 MYOZ2Q9NPC6 264 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 AAASQ9NRG9 546 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 PRKAG3Q9UGI9 489 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 STARD13Q9Y3M8 1113 aa10.15□□□□□ -0.78
VCAN-210ENST00000513960 KIF13BQ9NQT8 1826 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 E7ENQ6 273 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 DPEP1P16444 411 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 FASTKD3Q14CZ7 662 aaKnown RBP10.15□□□□□ -0.79
VCAN-210ENST00000513960 PHC3Q8NDX5 983 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 CEP70Q8NHQ1 597 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 TSSK1BQ9BXA7 367 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 KIAA1586Q9HCI6 787 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 KMT5AQ9NQR1 393 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 ANKEF1Q9NU02 776 aa10.15□□□□□ -0.79
VCAN-210ENST00000513960 ASTN2O75129 1339 aaPredicted RBP10.15□□□□□ -0.79
VCAN-210ENST00000513960 EDF1O60869 148 aaKnown RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 TBX10O75333 385 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 TJP3O95049 919 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 ZWINTO95229 277 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 ZBTB48P10074 688 aaPredicted RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 YARSP54577 528 aaKnown RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 UGCGQ16739 394 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 GRAMD1BQ3KR37 738 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 FAM182AQ5T1J6 154 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 KRT39Q6A163 491 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 RASSF3Q86WH2 238 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 CBWD2Q8IUF1 395 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 ANKLE1Q8NAG6 615 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 FAM81AQ8TBF8 368 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 SLC7A6OSQ96CW6 309 aaPredicted RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 BICD1Q96G01 975 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 CLPTM1LQ96KA5 538 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 CEP170P1Q96L14 293 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 NT5C1BQ96P26 610 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 PDCD2LQ9BRP1 358 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 BTBD10Q9BSF8 475 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 SYNCQ9H7C4 482 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 CHMP2BQ9UQN3 213 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 DENND3A2RUS2 1198 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 MAN1A1P33908 653 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 COG7P83436 770 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 DGKZQ13574 1117 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 LBRQ14739 615 aaKnown RBP10.14□□□□□ -0.79
VCAN-210ENST00000513960 SAMD3Q8N6K7 520 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 BBOF1Q8ND07 529 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.14□□□□□ -0.79
VCAN-210ENST00000513960 POMGNT1Q8WZA1 660 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 HIC2Q96JB3 615 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 FNBP1Q96RU3 617 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 ST6GALNAC4Q9H4F1 302 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 CYP4F11Q9HBI6 524 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 TMEM165Q9HC07 324 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 PCMTD2Q9NV79 361 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 TBX20Q9UMR3 447 aa10.14□□□□□ -0.79
VCAN-210ENST00000513960 I3L4J1 428 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms