RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GCOM2Q9BZD3 368 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 DCLRE1BQ9H816 532 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 LRRC4Q9HBW1 653 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 KCNQ5Q9NR82 932 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 NR2E1Q9Y466 385 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 DNALI1O14645 258 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 MAFGO15525 162 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PFDN1O60925 122 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PAX7P23759 505 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GCNT1Q02742 428 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 MCL1Q07820 350 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 MTFR1Q15390 333 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 LRRC36Q1X8D7 754 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 LRRC23Q53EV4 343 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 FAM47CQ5HY64 1035 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 RABGAP1LQ5R372 815 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 CRELD2Q6UXH1 353 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 SLC9A9Q8IVB4 645 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 E2F7Q96AV8 911 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 RSAD1Q9HA92 442 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 AVENQ9NQS1 362 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 ZFATQ9P243 1243 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PNMA3Q9UL41 463 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 CALCAP01258 141 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 GSTA2P09210 222 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 JAM2P57087 298 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 TNFAIP2Q03169 654 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 XRCC4Q13426 336 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 TTC39BQ5VTQ0 682 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 ARHGAP18Q8N392 663 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 CERS5Q8N5B7 392 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 PAK5Q9P286 719 aa8.82□□□□□ -1
LIMCH1-216ENST00000512820 KLHL8Q9P2G9 620 aaPredicted RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 SCAF8Q9UPN6 1271 aaKnown RBP8.82□□□□□ -1
LIMCH1-216ENST00000512820 ANKRD63C9JTQ0 380 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 HMGCS2P54868 508 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 FMO1Q01740 532 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 LACTB2Q53H82 288 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 RSBN1LQ6PCB5 846 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 FAF1Q9UNN5 650 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 AFF2P51816 1311 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 KPNA7A9QM74 516 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 SESN2P58004 480 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 GABPAQ06546 454 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 CUL3Q13618 768 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 CHI3L2Q15782 390 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PRPF39Q86UA1 669 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 NDUFAF2Q8N183 169 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PWWP2AQ96N64 755 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 METTL5Q9NRN9 209 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 VAV3Q9UKW4 847 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 DNPEPQ9ULA0 475 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 COG5Q9UP83 839 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 GRAP2O75791 330 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 CBX6O95503 412 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 ADRB2P07550 413 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 CAP2P40123 477 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PHKA2P46019 1235 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 VCPP55072 806 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 DYNC1I2Q13409 638 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 XRRA1Q6P2D8 792 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 MFSD7Q6UXD7 560 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 SLFN11Q7Z7L1 901 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PALB2Q86YC2 1186 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 TEX2Q8IWB9 1127 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 GPRASP2Q96D09 838 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 IDI2Q9BXS1 227 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 FBXO40Q9UH90 709 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PABPN1LA6NDY0 278 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 XPOTO43592 962 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 UBTFL6P0CB48 400 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 SRGAP2BP0DMP2 458 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 MYL2P10916 166 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 EPHB2P29323 1055 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 RGS7P49802 495 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 ACTR2P61160 394 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 PPATQ06203 517 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 SIX6OS1Q8N1H7 587 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 ZCCHC9Q8N567 271 aaKnown RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 ACTL9Q8TC94 416 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 SYTL5Q8TDW5 730 aaPredicted RBP8.81□□□□□ -1
LIMCH1-216ENST00000512820 ATG4CQ96DT6 458 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 OLFM3Q96PB7 478 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 KIF9Q9HAQ2 790 aa8.81□□□□□ -1
LIMCH1-216ENST00000512820 GJB6O95452 261 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ACADSP16219 412 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 STIP1P31948 543 aaKnown RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 CLK2P49760 499 aaKnown RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 C1QBPQ07021 282 aaKnown RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 ITKQ08881 620 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SUPT20HL1Q3ZLR7 823 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 KRT80Q6KB66 452 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ANO5Q75V66 913 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 LRRC6Q86X45 466 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ICA1LQ8NDH6 482 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SHC3Q92529 594 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 MIEF2Q96C03 454 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TLCD1Q96CP7 247 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 PCDHB18PQ96TA0 734 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 PCDH9Q9HC56 1237 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms