RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GPX6P59796 221 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 MTMR2Q13614 643 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 MAPK6Q16659 721 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 MSS51Q4VC12 460 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 EAPPQ56P03 285 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 PLEKHG4Q58EX7 1191 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 SCARA5Q6ZMJ2 495 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 NLRP9Q7RTR0 991 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 CCDC125Q86Z20 511 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RHPN2Q8IUC4 686 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RELL1Q8IUW5 271 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 FAXDC2Q96IV6 333 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RPAP3Q9H6T3 665 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 NRXN2Q9P2S2 1712 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 A0A0G2JND7 137 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 SESN3P58005 492 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RNASEH2BQ5TBB1 312 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ZBTB33Q86T24 672 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 DEPTORQ8TB45 409 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ACTL9Q8TC94 416 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 TTC25Q96NG3 672 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 SKIV2L2P42285 1042 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 VCPP55072 806 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 GDF10P55107 478 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ACTR2P61160 394 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 C1QBPQ07021 282 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 NR1H3Q13133 447 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 HIF1AQ16665 826 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 TRIM72Q6ZMU5 477 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ASAP3Q8TDY4 903 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 LRMDAQ9H2I8 198 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 DNAJC5Q9H3Z4 198 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 C17orf75Q9HAS0 396 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC17A7Q9P2U7 560 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 SMG5Q9UPR3 1016 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 NUMBLQ9Y6R0 609 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 PEX11AO75192 247 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 DCTN3O75935 186 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 RGS20O76081 388 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PSAPP07602 524 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 SUPT20HQ8NEM7 779 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 RFWD2Q8NHY2 731 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TCP10LQ8TDR4 215 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNF526Q8TF50 670 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 C10orf82Q8WW14 230 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 AKT1S1Q96B36 256 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 NAF1Q96HR8 494 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 GMLQ99445 158 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 FOXP3Q9BZS1 431 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 RNPEPL1Q9HAU8 725 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TJP2Q9UDY2 1190 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PCSK1NQ9UHG2 260 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 ZFP69BQ9UJL9 534 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 LTBP4Q8N2S1 1624 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CFAP69A5D8W1 941 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TTLL13PA6NNM8 815 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 MAGEB2O15479 319 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PRPF4O43172 522 aaKnown RBP eCLIP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TYROBPO43914 113 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CST8O60676 142 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PCK1P35558 622 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 ABL2P42684 1182 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CTCFP49711 727 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 FNBP1LQ5T0N5 605 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 GPAT2Q6NUI2 795 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 AGGF1Q8N302 714 aaeCLIP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 JPH1Q9HDC5 661 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PSMC3IPQ9P2W1 217 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CLUHO75153 1309 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 hCG_1818297A0A087WSY0 165 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TCRBV7S3A2A0A539 114 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PDHA1P08559 390 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CALB2P22676 271 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 GLRA2P23416 452 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 GCKP35557 465 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 OTUD4Q01804 1114 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CCDC15Q0P6D6 951 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 MORF4L2Q15014 288 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 OASLQ15646 514 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TFDP3Q5H9I0 405 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 LRRC6Q86X45 466 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 VCPIP1Q96JH7 1222 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNF668Q96K58 619 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 DENND2DQ9H6A0 471 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PDLIM7Q9NR12 457 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 EDN1P05305 212 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 CD19P15391 556 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 KCNA2P16389 499 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 TNFSF9P41273 254 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 ERFP50548 548 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 MYL6P60660 151 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 EMC2Q15006 297 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 PALM2Q8IXS6 379 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 EMC1Q8N766 993 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 IMPG2Q9BZV3 1241 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 BATF3Q9NR55 127 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 GINM1Q9NU53 330 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC9A2Q9UBY0 812 aa9.74□□□□□ -0.85
LIMCH1-215ENST00000512632 C2orf71A6NGG8 1288 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms