RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 LRRC3CA6NJW4 275 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 GPR3P46089 330 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 KRTAP10-11P60412 298 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 LHFPL2Q6ZUX7 228 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 MARS2Q96GW9 593 aaKnown RBP8.73□□□□□ -1.01
USP53-206ENST00000510737 PDLIM2Q96JY6 352 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 CASS4Q9NQ75 786 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 SEMA4GQ9NTN9 838 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 USP19O94966 1318 aa8.73□□□□□ -1.01
USP53-206ENST00000510737 AMY1AP04745 511 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 HSPA1AP0DMV8 641 aaKnown RBP8.72□□□□□ -1.01
USP53-206ENST00000510737 HSPA1BP0DMV9 641 aaKnown RBP8.72□□□□□ -1.01
USP53-206ENST00000510737 NOMO3P69849 1222 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 MALLQ13021 153 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 ANO4Q32M45 955 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 NOMO2Q5JPE7 1267 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 SP5Q6BEB4 398 aaPredicted RBP8.72□□□□□ -1.01
USP53-206ENST00000510737 SEM1Q6ZVN7 128 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 FAM43AQ8N2R8 423 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 ZGPATQ8N5A5 531 aaKnown RBP8.72□□□□□ -1.01
USP53-206ENST00000510737 AIFM2Q9BRQ8 373 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 SPATA5L1Q9BVQ7 753 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 REXO4Q9GZR2 422 aaKnown RBP8.72□□□□□ -1.01
USP53-206ENST00000510737 KIAA1586Q9HCI6 787 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 NMRK2Q9NPI5 230 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 TBCCD1Q9NVR7 557 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 C14orf119Q9NWQ9 140 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 TFCP2L1Q9NZI6 479 aa8.72□□□□□ -1.01
USP53-206ENST00000510737 SPATA31E1Q6ZUB1 1445 aa8.71□□□□□ -1.01
USP53-206ENST00000510737 RBMXL2O75526 392 aaKnown RBP8.71□□□□□ -1.02
USP53-206ENST00000510737 GSPT1P15170 499 aaKnown RBP8.71□□□□□ -1.02
USP53-206ENST00000510737 ARHGEF25Q86VW2 580 aa8.71□□□□□ -1.02
USP53-206ENST00000510737 COL23A1Q86Y22 540 aaPredicted RBP8.71□□□□□ -1.02
USP53-206ENST00000510737 AFAP1L2Q8N4X5 818 aa8.71□□□□□ -1.02
USP53-206ENST00000510737 CASKIN2Q8WXE0 1202 aa8.71□□□□□ -1.02
USP53-206ENST00000510737 ACEP12821 1306 aa8.71□□□□□ -1.02
USP53-206ENST00000510737 AKAP12Q02952 1782 aa8.71□□□□□ -1.02
USP53-206ENST00000510737 NHSQ6T4R5 1651 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 C1RP00736 705 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 CKBP12277 381 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 MTHFD2P13995 350 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 VAV2P52735 878 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 NHLH1Q02575 133 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 MTM1Q13496 603 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 STAT4Q14765 748 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 Q8NA96 180 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 NELL1Q92832 810 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 RUVBL1Q9Y265 456 aaKnown RBP8.7□□□□□ -1.02
USP53-206ENST00000510737 WDR17Q8IZU2 1322 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 TUBGCP6Q96RT7 1819 aa8.7□□□□□ -1.02
USP53-206ENST00000510737 CICQ96RK0 1608 aaPredicted RBP8.69□□□□□ -1.02
USP53-206ENST00000510737 MTNR1BP49286 362 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 SLFN5Q08AF3 891 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 MGAT2Q10469 447 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 FOXF2Q12947 444 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 GEN1Q17RS7 908 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.69□□□□□ -1.02
USP53-206ENST00000510737 PTCD3Q96EY7 689 aaKnown RBP8.69□□□□□ -1.02
USP53-206ENST00000510737 KLK15Q9H2R5 256 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 CCM2LQ9NUG4 571 aaPredicted RBP8.69□□□□□ -1.02
USP53-206ENST00000510737 KCTD5Q9NXV2 234 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 PCDHGA2Q9Y5H1 932 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 EIF3AQ14152 1382 aaKnown RBP8.69□□□□□ -1.02
USP53-206ENST00000510737 USP6P35125 1406 aa8.69□□□□□ -1.02
USP53-206ENST00000510737 EYA4O95677 639 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 OSMP13725 252 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 CACNA2D1P54289 1103 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 MRPS35P82673 323 aaKnown RBP8.68□□□□□ -1.02
USP53-206ENST00000510737 ATP8B2P98198 1209 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 FAM180AQ6UWF9 173 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 CCHCR1Q8TD31 782 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 ACTRT2Q8TDY3 377 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 ZNF384Q8TF68 577 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 ADI1Q9BV57 179 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 CAAP1Q9H8G2 361 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 TMEM140Q9NV12 185 aa8.68□□□□□ -1.02
USP53-206ENST00000510737 POLR3AO14802 1390 aaPredicted RBP8.68□□□□□ -1.02
USP53-206ENST00000510737 TCRBV7S2A1N4TA0A589 114 aa8.67□□□□□ -1.02
USP53-206ENST00000510737 BRD4O60885 1362 aaPredicted RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 TMPRSS15P98073 1019 aa8.67□□□□□ -1.02
USP53-206ENST00000510737 GJC2Q5T442 439 aaPredicted RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 PAPD7Q5XG87 772 aaKnown RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 LNX2Q8N448 690 aa8.67□□□□□ -1.02
USP53-206ENST00000510737 NAF1Q96HR8 494 aaKnown RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 GSTO2Q9H4Y5 243 aa8.67□□□□□ -1.02
USP53-206ENST00000510737 DNAJC28Q9NX36 388 aa8.67□□□□□ -1.02
USP53-206ENST00000510737 VSX1Q9NZR4 365 aaPredicted RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 MTO1Q9Y2Z2 717 aaKnown RBP8.67□□□□□ -1.02
USP53-206ENST00000510737 KIAA1210Q9ULL0 1709 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 COL3A1P02461 1466 aaPredicted RBP8.66□□□□□ -1.02
USP53-206ENST00000510737 IGSF1Q8N6C5 1336 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 CDHR4A6H8M9 788 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 MYADML2A6NDP7 307 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 GPR32O75388 356 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 PRKD3O94806 890 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 ENDOD1O94919 500 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 SSH3Q8TE77 659 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 SLC2A13Q96QE2 648 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 CDK19Q9BWU1 502 aa8.66□□□□□ -1.02
USP53-206ENST00000510737 IL17RBQ9NRM6 502 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms