RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 VN1R2Q8NFZ6 395 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 LMO3Q8TAP4 145 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 TAS1R2Q8TE23 839 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 HLA-CQ95604 372 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 RIPOR3Q96MK2 946 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 MED15Q96RN5 788 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 MMS19Q96T76 1030 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 CLSTN3Q9BQT9 956 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 NUP58Q9BVL2 599 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 NT5C1AQ9BXI3 368 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 UBXN6Q9BZV1 441 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 ELOVL4Q9GZR5 314 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 CEP72Q9P209 647 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 APEX2Q9UBZ4 518 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 PRKAG3Q9UGI9 489 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 MTUS1Q9ULD2 1270 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 L1RE1Q9UN81 338 aa9.04□□□□□ -0.96
PDGFC-205ENST00000506880 PLXNA3P51805 1871 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 C19orf67A6NJJ6 358 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 TRIM66O15016 1216 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 SPTLC1O15269 473 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CBFA2T2O43439 604 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CILPO75339 1184 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 ZMYND10O75800 440 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 TRIM49P0CI25 452 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 TRIM49CP0CI26 452 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 IGFBP4P22692 258 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 PBX3P40426 434 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 ASPAP45381 313 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 BRCC3P46736 316 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 PDE6CP51160 858 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 SLC8A3P57103 927 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 SNX16P57768 344 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 RPL10AP62906 217 aaKnown RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 ROR1Q01973 937 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 HYAL1Q12794 435 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CUL2Q13617 745 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 KRT31Q15323 416 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 LEXMQ3ZCV2 418 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CBWD6Q4V339 395 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 TCEAL5Q5H9L2 206 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CBWD3Q5JTY5 395 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 MIIPQ5JXC2 388 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CBWD5Q5RIA9 395 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 WSCD1Q658N2 575 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 TRIM65Q6PJ69 517 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 C11orf57Q6ZUT1 292 aaPredicted RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CEP57Q86XR8 500 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 DHX40Q8IX18 779 aaKnown RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 SMRP1Q8NCR6 262 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 MAFAQ8NHW3 353 aaPredicted RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 MYCBPAPQ8TBZ2 947 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 SPATA17Q96L03 361 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 POP1Q99575 1024 aaKnown RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 GPR88Q9GZN0 384 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CXCL16Q9H2A7 254 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 CYLDQ9NQC7 956 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 FANCLQ9NW38 375 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 DDX43Q9NXZ2 648 aaKnown RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 GCNT4Q9P109 453 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 HCSTQ9UBK5 93 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 UXTQ9UBK9 157 aaPredicted RBP9.03□□□□□ -0.96
PDGFC-205ENST00000506880 USTQ9Y2C2 406 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 PCDHB5Q9Y5E4 795 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 HCFC2Q9Y5Z7 792 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 DENND4CQ5VZ89 1909 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 NCANO14594 1321 aa9.03□□□□□ -0.96
PDGFC-205ENST00000506880 GREB1Q4ZG55 1949 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 HIDE1A8MVS5 230 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 ZNF197O14709 1029 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 MED7O43513 233 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 CPB1P15086 417 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 WEE1P30291 646 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 OR1D2P34982 312 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 NRIP1P48552 1158 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 SMAD4Q13485 552 aaKnown RBP9.02□□□□□ -0.97
PDGFC-205ENST00000506880 TRIM14Q14142 442 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 VEPH1Q14D04 833 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 PABPC1LQ4VXU2 614 aaKnown RBP9.02□□□□□ -0.97
PDGFC-205ENST00000506880 ANKRD54Q6NXT1 300 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 ZNF677Q86XU0 584 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 AOPEPQ8N6M6 819 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 B3GALNT2Q8NCR0 500 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 KREMEN2Q8NCW0 462 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 KBTBD7Q8WVZ9 684 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 MYLIPQ8WY64 445 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 OVCA2Q8WZ82 227 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 NXPE3Q969Y0 559 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 MSLNLQ96KJ4 702 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 PKMYT1Q99640 499 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 SYT15Q9BQS2 421 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 MIS12Q9H081 205 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 ADAM7Q9H2U9 754 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 UBE2ZQ9H832 354 aaPredicted RBP9.02□□□□□ -0.97
PDGFC-205ENST00000506880 CERS4Q9HA82 394 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 SAMSN1Q9NSI8 373 aaKnown RBP9.02□□□□□ -0.97
PDGFC-205ENST00000506880 THEGQ9P2T0 379 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 CDY1Q9Y6F8 540 aa9.02□□□□□ -0.97
PDGFC-205ENST00000506880 ZNF638Q14966 1978 aaKnown RBP9.02□□□□□ -0.97
PDGFC-205ENST00000506880 DENND4AQ7Z401 1863 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms