RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 PRKD2Q9BZL6 878 aa14.09□□□□□ -0.15
TCOF1-209ENST00000506630 GZF1Q9H116 711 aaPredicted RBP14.09□□□□□ -0.15
TCOF1-209ENST00000506630 TBC1D17Q9HA65 648 aa14.09□□□□□ -0.15
TCOF1-209ENST00000506630 CYP4F11Q9HBI6 524 aa14.09□□□□□ -0.15
TCOF1-209ENST00000506630 WDR6Q9NNW5 1121 aaKnown RBP14.09□□□□□ -0.15
TCOF1-209ENST00000506630 SNX9Q9Y5X1 595 aa14.09□□□□□ -0.15
TCOF1-209ENST00000506630 DENND4CQ5VZ89 1909 aa14.09□□□□□ -0.15
TCOF1-209ENST00000506630 ZNF638Q14966 1978 aaKnown RBP14.09□□□□□ -0.15
TCOF1-209ENST00000506630 TRIM49BA6NDI0 452 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 CCL16O15467 120 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 HUS1O60921 280 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 PHACTR2O75167 634 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 ABLIM3O94929 683 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 KRT13P13646 458 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 ADCY1Q08828 1119 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 TRPC3Q13507 836 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 EDRF1Q3B7T1 1238 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 TPGS2Q68CL5 300 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 PHLDB3Q6NSJ2 640 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 RNF19BQ6ZMZ0 732 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 CLEC17AQ6ZS10 378 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 FAM186BQ8IYM0 893 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 THEM5Q8N1Q8 247 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 OR10T2Q8NGX3 314 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 PARD3BQ8TEW8 1205 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 ZNF516Q92618 1163 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 BORCS6Q96GS4 357 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 PGLYRP2Q96PD5 576 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 TMEM209Q96SK2 561 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 RHOBTB2Q9BYZ6 727 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 EPS15L1Q9UBC2 864 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 L1RE1Q9UN81 338 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 POLIQ9UNA4 740 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 SIT1Q9Y3P8 196 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 CLUHO75153 1309 aa14.08□□□□□ -0.16
TCOF1-209ENST00000506630 CACNA1AO00555 2505 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 PSMA7O14818 248 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 CETN3O15182 167 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 MAPK13O15264 365 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 XYLBO75191 536 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 AKAP3O75969 853 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 SEC24AO95486 1093 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 LRG1P02750 347 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 HNRNPA1P09651 372 aaKnown RBP eCLIP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 ATF2P15336 505 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 HOXA9P31269 272 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 PSMC2P35998 433 aaKnown RBP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 DLG4P78352 724 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 UVSSAQ2YD98 709 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 TDRD10Q5VZ19 366 aaKnown RBP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 CENPPQ6IPU0 288 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 KLHL10Q6JEL2 608 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 INTS8Q75QN2 995 aaKnown RBP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 ADGRF2Q8IZF7 708 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 PDCL2Q8N4E4 241 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 TOP6BLQ8N6T0 577 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 EEF2KMTQ96G04 330 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 GDAP2Q9NXN4 497 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 AFF4Q9UHB7 1163 aaKnown RBP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 EP300Q09472 2414 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-209ENST00000506630 OBSL1O75147 1896 aa14.07□□□□□ -0.16
TCOF1-209ENST00000506630 DMDP11532 3685 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 GREB1Q4ZG55 1949 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 GOLGA6L22H0YM25 854 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 CST3P01034 146 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 DCNP07585 359 aaKnown RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TRIM49P0CI25 452 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TRIM49CP0CI26 452 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 EPB41P11171 864 aaKnown RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 CD44P16070 742 aaKnown RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 CCNE1P24864 410 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 PPP1R2P41236 205 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 VAMP7P51809 220 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 AP3M2P53677 418 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 PMS1P54277 932 aaKnown RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MYL6P60660 151 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TNNC1P63316 161 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MYL7Q01449 175 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 LRRC63Q05C16 580 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MORC3Q14149 939 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 SLC39A12Q504Y0 691 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 ANKRD40Q6AI12 368 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 GRASPQ7Z6J2 395 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-209ENST00000506630 C1orf210Q8IVY1 113 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TCEAL8Q8IYN2 117 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TMEM86AQ8N2M4 240 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 TMC2Q8TDI7 906 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 GPR152Q8TDT2 470 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MYADMQ96S97 322 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MMS19Q96T76 1030 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MMRN2Q9H8L6 949 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 ARHGEF3Q9NR81 526 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 LMBRD1Q9NUN5 540 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 KIAA1468Q9P260 1216 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 CTNND2Q9UQB3 1225 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 INSL5Q9Y5Q6 135 aa14.06□□□□□ -0.16
TCOF1-209ENST00000506630 MTMR11A4FU01 709 aa14.05□□□□□ -0.16
TCOF1-209ENST00000506630 PAPLNO95428 1278 aa14.05□□□□□ -0.16
TCOF1-209ENST00000506630 C4BPAP04003 597 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms