RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	TTLL4	Q14679	1199 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	FAM187B	Q17R55	369 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	PTPN20	Q4JDL3	420 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	IZUMO3	Q5VZ72	239 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	DENND1B	Q6P3S1	775 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	SPOCD1	Q6ZMY3	1216 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	FASTKD5	Q7L8L6	764 aa	Known RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	OTUD6B	Q8N6M0	293 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	LINC01465	Q8N7H1	131 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	C1orf127	Q8N9H9	656 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CXorf38	Q8TB03	319 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CCDC134	Q9H6E4	229 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	RPF1	Q9H9Y2	349 aa	Known RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	DNAJC17	Q9NVM6	304 aa	Known RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CYTH4	Q9UIA0	394 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	DNPEP	Q9ULA0	475 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	hCG_1818297	A0A087WSY0	165 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	KIAA0754	O94854	1291 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	ITGBL1	O95965	494 aa	Predicted RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	ARHGAP1	Q07960	439 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	AMHR2	Q16671	573 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CYP4A22	Q5TCH4	519 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CHADL	Q6NUI6	762 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	PRUNE1	Q86TP1	453 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	SHCBP1	Q8NEM2	672 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	IPO4	Q8TEX9	1081 aa	Known RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	OPTN	Q96CV9	577 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	SEC16B	Q96JE7	1060 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	ERAP1	Q9NZ08	941 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	NXF1	Q9UBU9	619 aa	Known RBP	13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	STRIP2	Q9ULQ0	834 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	CEP83	Q9Y592	693 aa		13.78	□□□□□ -0.2
MATR3-233	ENST00000504203	NFIC	P08651	508 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	CDKN2B	P42772	138 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	RAD23B	P54727	409 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	LACTB	P83111	547 aa	Predicted RBP	13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	IFT88	Q13099	833 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	TFDP3	Q5H9I0	405 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	KAZN	Q674X7	775 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	TAOK1	Q7L7X3	1001 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	POLN	Q7Z5Q5	900 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	GLIS1	Q8NBF1	620 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	FOXP3	Q9BZS1	431 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	SDCBP2	Q9H190	292 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	DDX56	Q9NY93	547 aa	Known RBP	13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	DRG1	Q9Y295	367 aa	Known RBP	13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	ZSWIM8	A7E2V4	1837 aa		13.77	□□□□□ -0.21
MATR3-233	ENST00000504203	ASB14	A6NK59	587 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	C3orf70	A6NLC5	250 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	SIGLEC16	A6NMB1	481 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	INSRR	P14616	1297 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ATF7	P17544	494 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	RFC1	P35251	1148 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	RAP1GAP	P47736	663 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	GSC	P56915	257 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	OASL	Q15646	514 aa	Known RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	CNGA2	Q16280	664 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	P3H1	Q32P28	736 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	CCDC38	Q502W7	563 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	EAPP	Q56P03	285 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ZNF667	Q5HYK9	610 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ZNF484	Q5JVG2	852 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	WDR78	Q5VTH9	848 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ARMCX2	Q7L311	632 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	PACS2	Q86VP3	889 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	MICALL1	Q8N3F8	863 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	TMEM130	Q8N3G9	435 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ALLC	Q8N6M5	410 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ARFGAP1	Q8N6T3	406 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	CCHCR1	Q8TD31	782 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	INTS9	Q9NV88	658 aa	Known RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	RNF181	Q9P0P0	153 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	TJP2	Q9UDY2	1190 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	LACTBL1	A8MY62	500 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	DNALI1	O14645	258 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	MED7	O43513	233 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	FSBP	O95073	299 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	KRT19	P08727	400 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	STAG3L1	P0CL83	205 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	MCF2	P10911	925 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	POLR2B	P30876	1174 aa	Known RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	CDH8	P55286	799 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	TTLL12	Q14166	644 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	TMEM132A	Q24JP5	1023 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	WDR72	Q3MJ13	1102 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	TAPT1	Q6NXT6	567 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	GSTA5	Q7RTV2	222 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	CPLX4	Q7Z7G2	160 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ZCCHC9	Q8N567	271 aa	Known RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	FNIP1	Q8TF40	1166 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	ARHGEF2	Q92974	986 aa	Known RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	NKD2	Q969F2	451 aa	Predicted RBP	13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	VRTN	Q9H8Y1	702 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	EFCC1	Q9HA90	598 aa		13.76	□□□□□ -0.21
MATR3-233	ENST00000504203	LGALS2	P05162	132 aa		13.75	□□□□□ -0.21
MATR3-233	ENST00000504203	CD19	P15391	556 aa		13.75	□□□□□ -0.21
MATR3-233	ENST00000504203	GJA5	P36382	358 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms