RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SGSM1Q2NKQ1 1148 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 ZNF699Q32M78 642 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 USP41Q3LFD5 358 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 VWA3BQ502W6 1294 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 KIAA1841Q6NSI8 718 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.76□□□□□ -0.69
NUP54-203ENST00000504173 CEP57Q86XR8 500 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 RNF168Q8IYW5 571 aaPredicted RBP10.76□□□□□ -0.69
NUP54-203ENST00000504173 EFHBQ8N7U6 833 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 RNF214Q8ND24 703 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 FBXL13Q8NEE6 735 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SUSD6Q92537 303 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 RUBCNQ92622 972 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 TAF4BQ92750 862 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SENP8Q96LD8 212 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 TCF25Q9BQ70 676 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 HSD3B7Q9H2F3 369 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.76□□□□□ -0.69
NUP54-203ENST00000504173 ENTPD7Q9NQZ7 604 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 RAB20Q9NX57 234 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 PCDHB8Q9UN66 801 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 SNX9Q9Y5X1 595 aa10.76□□□□□ -0.69
NUP54-203ENST00000504173 UNC79Q9P2D8 2635 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 GCN1Q92616 2671 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 M0QZQ0 153 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 PMM2O15305 246 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 HUS1O60921 280 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 STAU1O95793 577 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 EFEMP2O95967 443 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 ASS1P00966 412 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 CTSAP10619 480 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 ODC1P11926 461 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 P4HA1P13674 534 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 FGFR3P22607 806 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 DNAJB1P25685 340 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 TKTP29401 623 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 GLUD2P49448 558 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 COPB1P53618 953 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 MTMR3Q13615 1198 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 ANGPT1Q15389 498 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 WDR72Q3MJ13 1102 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 ZNF667Q5HYK9 610 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 WDR44Q5JSH3 913 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 MIIPQ5JXC2 388 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 PLPP4Q5VZY2 271 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 SPOPLQ6IQ16 392 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 TAS1R1Q7RTX1 841 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 TMC7Q7Z402 723 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 CCDC105Q8IYK2 499 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 APPL2Q8NEU8 664 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 MICAL1Q8TDZ2 1067 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 RIN2Q8WYP3 895 aaPredicted RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 SEMA4DQ92854 862 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 B3GALT6Q96L58 329 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 MMS19Q96T76 1030 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 PI4K2AQ9BTU6 479 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 TTPALQ9BTX7 342 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 ZBP1Q9H171 429 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 XYLT2Q9H1B5 865 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 VPS16Q9H269 839 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 NDST4Q9H3R1 872 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 IGFLR1Q9H665 355 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 VRTNQ9H8Y1 702 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 GDAP2Q9NXN4 497 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 NXF1Q9UBU9 619 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 LIMA1Q9UHB6 759 aaKnown RBP10.75□□□□□ -0.69
NUP54-203ENST00000504173 COQ4Q9Y3A0 265 aa10.75□□□□□ -0.69
NUP54-203ENST00000504173 CEP295Q9C0D2 2601 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 GTPBP10A4D1E9 387 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 C2CD2LO14523 706 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 CXCL14O95715 111 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 SERPINC1P01008 464 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 TYMPP19971 482 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 ATXN1P54253 815 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 ERVFC1P60507 584 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 NOP14P78316 857 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 DSG1Q02413 1049 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 SMC1AQ14683 1233 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 RTP2Q5QGT7 225 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 FKBP15Q5T1M5 1219 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 WSCD1Q658N2 575 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 PDE12Q6L8Q7 609 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 SCARA5Q6ZMJ2 495 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 GBP6Q6ZN66 633 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 METTL23Q86XA0 190 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 TOP6BLQ8N6T0 577 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 KREMEN2Q8NCW0 462 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 AUTS2Q8WXX7 1259 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 PPP2R3CQ969Q6 453 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 ELMO3Q96BJ8 720 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 INTS2Q9H0H0 1204 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 NGRNQ9NPE2 291 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 MRPL17Q9NRX2 175 aaKnown RBP10.74□□□□□ -0.69
NUP54-203ENST00000504173 CHST7Q9NS84 486 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 GCNT4Q9P109 453 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 DSEQ9UL01 958 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 POLIQ9UNA4 740 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 SORCS3Q9UPU3 1222 aa10.74□□□□□ -0.69
NUP54-203ENST00000504173 SSX2IPQ9Y2D8 614 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms