RNA–Protein interactions for RNA: ENST00000493792.1

TRAPPC12-222, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-222	ENST00000493792	TMEM209	Q96SK2	561 aa		11.18	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	RHOBTB2	Q9BYZ6	727 aa		11.18	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	PRKD2	Q9BZL6	878 aa		11.18	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TRIM49B	A6NDI0	452 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TBC1D4	O60343	1298 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	AKAP3	O75969	853 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SEC24A	O95486	1093 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CST3	P01034	146 aa	Predicted RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CYP11A1	P05108	521 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	HNRNPA1	P09651	372 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TRIM49	P0CI25	452 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TRIM49C	P0CI26	452 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	EPB41	P11171	864 aa	Known RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GBP2	P32456	591 aa	Predicted RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	PPP1R2	P41236	205 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	AP3M2	P53677	418 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MYL6	P60660	151 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TNNC1	P63316	161 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DLG4	P78352	724 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MYL7	Q01449	175 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	EDRF1	Q3B7T1	1238 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SLC39A12	Q504Y0	691 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ZCWPW2	Q504Y3	356 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TCERG1L	Q5VWI1	586 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TPGS2	Q68CL5	300 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ANKRD40	Q6AI12	368 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CYP26C1	Q6V0L0	522 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	INTS8	Q75QN2	995 aa	Known RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	OTOP3	Q7RTS5	596 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ADGRF2	Q8IZF7	708 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	PDCL2	Q8N4E4	241 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DCLK2	Q8N568	766 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TMC2	Q8TDI7	906 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ZNF516	Q92618	1163 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CLSTN2	Q9H4D0	955 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	KCNK12	Q9HB15	430 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	KIAA1468	Q9P260	1216 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	NXF1	Q9UBU9	619 aa	Known RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	AFF4	Q9UHB7	1163 aa	Known RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	L1RE1	Q9UN81	338 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DUSP12	Q9UNI6	340 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CTNND2	Q9UQB3	1225 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792		R4GN57	208 aa		11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.17	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CLUH	O75153	1309 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	KRBA1	A5PL33	1030 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ABLIM3	O94929	683 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ATF2	P15336	505 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CD44	P16070	742 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ACAT1	P24752	427 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CCNE1	P24864	410 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	PIK3CA	P42336	1068 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	PMS1	P54277	932 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	STX17	P56962	302 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	FKBP3	Q00688	224 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TSPY1	Q01534	308 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DUSP4	Q13115	394 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MORC3	Q14149	939 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	NFIL3	Q16649	462 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	UVSSA	Q2YD98	709 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ZNF699	Q32M78	642 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	WDR72	Q3MJ13	1102 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	COBLL1	Q53SF7	1204 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TDRD10	Q5VZ19	366 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CENPP	Q6IPU0	288 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CLEC17A	Q6ZS10	378 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GET4	Q7L5D6	327 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GRASP	Q7Z6J2	395 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DCP1B	Q8IZD4	617 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SIX5	Q8N196	739 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TMEM86A	Q8N2M4	240 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ELMOD1	Q8N336	334 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ATAD1	Q8NBU5	361 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	OR10T2	Q8NGX3	314 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	CXorf38	Q8TB03	319 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	NELFB	Q8WX92	580 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SYAP1	Q96A49	352 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ZNF707	Q96C28	371 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ACSF2	Q96CM8	615 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	BORCS6	Q96GS4	357 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GZF1	Q9H116	711 aa	Predicted RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	NUP62CL	Q9H1M0	184 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SNX25	Q9H3E2	840 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.16	□□□□□ -0.62	3e-10	■■■■■ 57.7
TRAPPC12-222	ENST00000493792	LMBRD1	Q9NUN5	540 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GDAP2	Q9NXN4	497 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	DDX43	Q9NXZ2	648 aa	Known RBP	11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	SLC27A5	Q9Y2P5	690 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	INSL5	Q9Y5Q6	135 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	TSC2	P49815	1807 aa		11.16	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MTMR11	A4FU01	709 aa		11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	MAPK13	O15264	365 aa		11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	NARS	O43776	548 aa	Known RBP	11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	FSHR	P23945	695 aa		11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	HOXA9	P31269	272 aa		11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	ATIC	P31939	592 aa		11.15	□□□□□ -0.62
TRAPPC12-222	ENST00000493792	GCLM	P48507	274 aa		11.15	□□□□□ -0.62

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