RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SPECC1L-ADORA2AF8WAN1 911 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 PIRO00625 290 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 MEFVO15553 781 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-213ENST00000493475 HUS1O60921 280 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 RETP07949 1114 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 NFICP08651 508 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 ACOT2P49753 483 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 RPL10AP62906 217 aaKnown RBP12.49□□□□□ -0.41
COL6A3-213ENST00000493475 MYL7Q01449 175 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 GRSF1Q12849 480 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL6A3-213ENST00000493475 SIM2Q14190 667 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-213ENST00000493475 ITPRIPL2Q3MIP1 535 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 RRAGBQ5VZM2 374 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 CCDC73Q6ZRK6 1079 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 CEP68Q76N32 757 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 LONP2Q86WA8 852 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 TMC8Q8IU68 726 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 CCDC26Q8TAB7 109 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 MRPS31Q92665 395 aaKnown RBP12.49□□□□□ -0.41
COL6A3-213ENST00000493475 ACCSQ96QU6 501 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 RTKNQ9BST9 563 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 LRRC27Q9C0I9 530 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 ZCWPW1Q9H0M4 648 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 PCDHB5Q9Y5E4 795 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 CACNA1IQ9P0X4 2223 aa12.49□□□□□ -0.41
COL6A3-213ENST00000493475 ANO9A1A5B4 782 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 MYBPHLA2RUH7 354 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 FAM189A1O60320 539 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 MOSPD3O75425 235 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 PAPSS2O95340 614 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-213ENST00000493475 CSH1P0DML2 217 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 CSH2P0DML3 217 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 CHRNB1P11230 501 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 NMT1P30419 496 aaKnown RBP12.48□□□□□ -0.41
COL6A3-213ENST00000493475 CTHP32929 405 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 PDE6CP51160 858 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 GUCY2FP51841 1108 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 TMEM86AQ8N2M4 240 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 FSIP1Q8NA03 581 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 DDX1Q92499 740 aaKnown RBP12.48□□□□□ -0.41
COL6A3-213ENST00000493475 HAPLN2Q9GZV7 340 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 DNAJC25Q9H1X3 360 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 TMEM206Q9H813 350 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 BLOC1S4Q9NUP1 217 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 ABI2Q9NYB9 513 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-213ENST00000493475 STYXL1Q9Y6J8 313 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 MYH11P35749 1972 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 TRIP11Q15643 1979 aa12.48□□□□□ -0.41
COL6A3-213ENST00000493475 KIAA0391O15091 583 aaKnown RBP12.47□□□□□ -0.41
COL6A3-213ENST00000493475 GCNT3O95395 438 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 PCSK1P29120 753 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 TFAMQ00059 246 aaKnown RBP12.47□□□□□ -0.41
COL6A3-213ENST00000493475 MYO1EQ12965 1108 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 FZD5Q13467 585 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 DYMQ7RTS9 669 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 ZNF720Q7Z2F6 126 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 SPATA18Q8TC71 538 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 NETO1Q8TDF5 533 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 LRRC3Q9BY71 257 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 RBAKQ9NYW8 714 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-213ENST00000493475 EHD2Q9NZN4 543 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 ITGA11Q9UKX5 1188 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 FRYLO94915 3013 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 DOCK6Q96HP0 2047 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 CEP250Q9BV73 2442 aa12.47□□□□□ -0.41
COL6A3-213ENST00000493475 PATJQ8NI35 1801 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 F5P12259 2224 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 ARNTLO00327 626 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 PRPF40AO75400 957 aaKnown RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 TMEM191BP0C7N4 346 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 HAPLN1P10915 354 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 HOXB3P14651 431 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 IDEP14735 1019 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 GARTP22102 1010 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 STAT6P42226 847 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 LHX1P48742 406 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 PDGFRLQ15198 375 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 SURF1Q15526 300 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 ZC2HC1CQ53FD0 456 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 L1TD1Q5T7N2 865 aaKnown RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 WSCD1Q658N2 575 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 GAREM2Q75VX8 874 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 SFR1Q86XK3 245 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 CMTM8Q8IZV2 173 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 ZNF687Q8N1G0 1237 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 LRRC52Q8N7C0 313 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 OR10T2Q8NGX3 314 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 NOC3LQ8WTT2 800 aaKnown RBP12.46□□□□□ -0.41
COL6A3-213ENST00000493475 TMEM209Q96SK2 561 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 LPIN3Q9BQK8 851 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 ACBD6Q9BR61 282 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 FAM213AQ9BRX8 229 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 CRISPLD1Q9H336 500 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 ABCB6Q9NP58 842 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 OLFML3Q9NRN5 406 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 SLC8A2Q9UPR5 921 aa12.46□□□□□ -0.41
COL6A3-213ENST00000493475 FANCMQ8IYD8 2048 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 NOTCH4Q99466 2003 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 PDCD11Q14690 1871 aaKnown RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 ANKRD63C9JTQ0 380 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms