RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 EXOC7Q9UPT5 735 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 TRAF3IP3Q9Y228 551 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 HES2Q9Y543 173 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 IRAK3Q9Y616 596 aa7.33□□□□□ -1.24
VPS52-219ENST00000493379 FANCMQ8IYD8 2048 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 SMIM28A0A1B0GU29 152 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 TMEM189-UBE2V1I3L0A0 370 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 FSCN2O14926 492 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 PI15O43692 258 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 B4GALT3O60512 393 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 DDHD2O94830 711 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 LDHAP00338 332 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 C1RP00736 705 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 AVPP01185 164 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 RPN1P04843 607 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 ALDH2P05091 517 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 RPLP1P05386 114 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 ITGB1P05556 798 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 MYBP10242 640 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 CYP3A5P20815 502 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 CASP1P29466 404 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 PPM1AP35813 382 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 GATMP50440 423 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 ASIC1P78348 528 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 ENPEPQ07075 957 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 GRIK3Q13003 919 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 NOLC1Q14978 699 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS52-219ENST00000493379 KNOP1Q1ED39 458 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 TSNAXIP1Q2TAA8 658 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 PDE12Q6L8Q7 609 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 FAM117BQ6P1L5 589 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 KCNT2Q6UVM3 1135 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 CD300LGQ6UXG3 332 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 STXBP4Q6ZWJ1 553 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 SLC39A11Q8N1S5 342 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 GUF1Q8N442 669 aaKnown RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 COLGALT1Q8NBJ5 622 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 KIAA0895Q8NCT3 520 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 GLIS3Q8NEA6 775 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 PIK3R5Q8WYR1 880 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 ACAP3Q96P50 834 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 GAD1Q99259 594 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 C11orf84Q9BUA3 381 aaPredicted RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 TRIM6Q9C030 488 aaPredicted RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 GBP3Q9H0R5 595 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 BLZF1Q9H2G9 400 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 KCTD10Q9H3F6 313 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 ASB7Q9H672 318 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 TOPORSQ9NS56 1045 aaPredicted RBP7.32□□□□□ -1.24
VPS52-219ENST00000493379 SNTG2Q9NY99 539 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 CD207Q9UJ71 328 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 DERAQ9Y315 318 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 PCDHA5Q9Y5H7 936 aa7.32□□□□□ -1.24
VPS52-219ENST00000493379 A0A1B0GTH6 734 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 A6NHS1 94 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 TTLL8A6PVC2 850 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 PDXKO00764 312 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 HNRNPDLO14979 420 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 RECQL4O94761 1208 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 PRPF6O94906 941 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 CSPG5O95196 566 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 GCNT3O95395 438 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 PAPLNO95428 1278 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 THP07101 528 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 PAX3P23760 479 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 AKAP5P24588 427 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 LRPAP1P30533 357 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 RPL9P32969 192 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 ALDH7A1P49419 539 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 LIG4P49917 911 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 IDH3AP50213 366 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 BCAR1P56945 870 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 TUSC3Q13454 348 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 CTC1Q2NKJ3 1217 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZNF568Q3ZCX4 644 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZCWPW2Q504Y3 356 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 TIGD5Q53EQ6 642 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 CENPPQ6IPU0 288 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 DDX53Q86TM3 631 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 NT5DC4Q86YG4 428 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZC3H3Q8IXZ2 948 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 ABI1Q8IZP0 508 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 CEP120Q8N960 986 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 KLHL23Q8NBE8 558 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 URGCPQ8TCY9 931 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 HPS3Q969F9 1004 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 IGSF21Q96ID5 467 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZFP42Q96MM3 310 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZMAT2Q96NC0 199 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 RTKNQ9BST9 563 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 CCDC94Q9BW85 323 aaPredicted RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 CXCL16Q9H2A7 254 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 ZHX3Q9H4I2 956 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 NSUN3Q9H649 340 aaKnown RBP7.31□□□□□ -1.24
VPS52-219ENST00000493379 KIAA1586Q9HCI6 787 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 SLC39A2Q9NP94 309 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 TIMMDC1Q9NPL8 285 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 CHST7Q9NS84 486 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 SPG21Q9NZD8 308 aa7.31□□□□□ -1.24
VPS52-219ENST00000493379 TBC1D7Q9P0N9 293 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms