RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PRAMEF12O95522 483 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 LDHAP00338 332 aaKnown RBP14.7□□□□□ -0.06
COL6A3-211ENST00000491233 HAPLN1P10915 354 aaPredicted RBP14.7□□□□□ -0.06
COL6A3-211ENST00000491233 CCNE1P24864 410 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 FCHO2Q0JRZ9 810 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 BFSP1Q12934 665 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 MTAPQ13126 283 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 CCDC65Q8IXS2 484 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 C1orf127Q8N9H9 656 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 LINC00301Q8NCQ3 95 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 GIPC2Q8TF65 315 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 GCNAQ96QF7 691 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 IL21Q9HBE4 155 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 L1RE1Q9UN81 338 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 AGAP1Q9UPQ3 857 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 PCDHGA2Q9Y5H1 932 aa14.7□□□□□ -0.06
COL6A3-211ENST00000491233 DPYSL4O14531 572 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 EXTL3O43909 919 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 CDC25CP30307 473 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 SOX9P48436 509 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TSPY1Q01534 308 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 SMARCB1Q12824 385 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TAF12Q16514 161 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 KIAA2013Q8IYS2 634 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 DCP1BQ8IZD4 617 aaKnown RBP14.69□□□□□ -0.06
COL6A3-211ENST00000491233 GPD1LQ8N335 351 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 PDCL2Q8N4E4 241 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 LRRC52Q8N7C0 313 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 SUMF1Q8NBK3 374 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 GLIS3Q8NEA6 775 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 CACTINQ8WUQ7 758 aaKnown RBP14.69□□□□□ -0.06
COL6A3-211ENST00000491233 RUBCNQ92622 972 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 ZFYVE19Q96K21 471 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 LRRC3BQ96PB8 259 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TNMDQ9H2S6 317 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 PCIF1Q9H4Z3 704 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TASP1Q9H6P5 420 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TMEM206Q9H813 350 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 LMAN1LQ9HAT1 526 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 TMLHEQ9NVH6 421 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 ZSCAN32Q9NX65 697 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 PCDHB5Q9Y5E4 795 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 DMDP11532 3685 aa14.69□□□□□ -0.06
COL6A3-211ENST00000491233 OTOGLQ3ZCN5 2332 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 SPTLC2O15270 562 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 KRT19P08727 400 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 TMEM191BP0C7N4 346 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ACAT1P24752 427 aaKnown RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ID4P47928 161 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 GPR15P49685 360 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 KPNA1P52294 538 aaPredicted RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 E2F4Q16254 413 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ARHGAP29Q52LW3 1261 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 LMBRD2Q68DH5 695 aaPredicted RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 SCARA3Q6AZY7 606 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 DCLK2Q8N568 766 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ZBTB44Q8NCP5 570 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 STKLD1Q8NE28 680 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 CXorf38Q8TB03 319 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ATRIPQ8WXE1 791 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 NELL1Q92832 810 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 HPS3Q969F9 1004 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 MSANTD3Q96H12 275 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 IER2Q9BTL4 223 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 MTMR12Q9C0I1 747 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 SMG9Q9H0W8 520 aaKnown RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 PDE11AQ9HCR9 933 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 DDX43Q9NXZ2 648 aaKnown RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 OBP2AQ9NY56 170 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 TFIP11Q9UBB9 837 aaKnown RBP14.68□□□□□ -0.06
COL6A3-211ENST00000491233 ITGA11Q9UKX5 1188 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 PTPRDP23468 1912 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 GREB1Q4ZG55 1949 aa14.68□□□□□ -0.06
COL6A3-211ENST00000491233 HELZP42694 1942 aaKnown RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 ANAPC1Q9H1A4 1944 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 HUS1O60921 280 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 LILRB5O75023 590 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 PPP6R2O75170 966 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 PRPF40AO75400 957 aaKnown RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 CHRNB1P11230 501 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 CTHP32929 405 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 MLLT6P55198 1093 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 ASIC1P78348 528 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 NFE2Q16621 373 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 CCDC142Q17RM4 750 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 INTS6LQ5JSJ4 861 aaKnown RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 FOXD4L5Q5VV16 416 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 C1orf228Q6PIY5 440 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 STXBP4Q6ZWJ1 553 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 OSTM1Q86WC4 334 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 CSGALNACT2Q8N6G5 542 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 TTC8Q8TAM2 541 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 BPIFB1Q8TDL5 484 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 LEO1Q8WVC0 666 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 FOXD4L4Q8WXT5 416 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 DHX58Q96C10 678 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 ZNF396Q96N95 335 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-211ENST00000491233 PI4K2AQ9BTU6 479 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 TRIM9Q9C026 710 aa14.67□□□□□ -0.06
COL6A3-211ENST00000491233 CUEDC2Q9H467 287 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms