RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ITGALP20701 1170 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TGM1P22735 817 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ZFP36P26651 326 aaKnown RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 CXCR5P32302 372 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 IL12RB1P42701 662 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PHKA1P46020 1223 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 RAB27AP51159 221 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 MAP2K6P52564 334 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 INHBEP58166 350 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 MRPS35P82673 323 aaKnown RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 MCL1Q07820 350 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 SLFN5Q08AF3 891 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 CYP2A13Q16696 494 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 GEN1Q17RS7 908 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 AMOTQ4VCS5 1084 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 STRIP1Q5VSL9 837 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 SP5Q6BEB4 398 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TAPT1Q6NXT6 567 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 LAYNQ6UX15 382 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 SLC30A10Q6XR72 485 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 GPR149Q86SP6 731 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 CFAP52Q8N1V2 620 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PCSK9Q8NBP7 692 aaKnown RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PDPRQ8NCN5 879 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 B3GALNT2Q8NCR0 500 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TMIEQ8NEW7 156 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TOR1AIP2Q8NFQ8 470 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 C1GALT1C1Q96EU7 318 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 SLC35A4Q96G79 324 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 Q96MF0 132 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 KLHL32Q96NJ5 620 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 AIFM2Q9BRQ8 373 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ANP32EQ9BTT0 268 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TLR10Q9BXR5 811 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 RIOX1Q9H6W3 641 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 UNKLQ9H9P5 680 aaKnown RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 KIAA1586Q9HCI6 787 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TMEM74BQ9NUR3 256 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 INTS13Q9NVM9 706 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ZIM2Q9NZV7 527 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 HSFX1Q9UBD0 423 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 TRPC5Q9UL62 973 aaPredicted RBP2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ZDHHC8Q9ULC8 765 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 STXBP5LQ9Y2K9 1186 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 PCDHA1Q9Y5I3 950 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 NR2E3Q9Y5X4 410 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 NPATQ14207 1427 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 FGD6Q6ZV73 1430 aa2.74□□□□□ -1.97
HMGB1-208ENST00000490788 ERICH3Q5RHP9 1530 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 MYO3AQ8NEV4 1616 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 A0A1W2PS29 197 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CCDC151A5D8V7 595 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 F5H697 171 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 MYO1CO00159 1063 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 PPM1GO15355 546 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 YY2O15391 372 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 VPS4BO75351 444 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SOAT2O75908 522 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ABLIM3O94929 683 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 NUDT3O95989 172 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 TYRP14679 529 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 BMP5P22003 454 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 PRDX5P30044 214 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SLC6A4P31645 630 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ANXA11P50995 505 aaKnown RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 FXR1P51114 621 aaKnown RBP eCLIP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SEC24CP53992 1094 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 POU6F2P78424 691 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 DYRK1AQ13627 763 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 GTF2H3Q13889 308 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 HABP2Q14520 560 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 PPP2R5AQ15172 486 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SF3B3Q15393 1217 aaKnown RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 SMN1Q16637 294 aaKnown RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CD300EQ496F6 205 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 KHDC1LQ5JSQ8 128 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ATAT1Q5SQI0 421 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 Q6ZNX1 250 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 MICALCLQ6ZW33 695 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 DAAM2Q86T65 1068 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 DENND1CQ8IV53 801 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CHPFQ8IZ52 775 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 PRR18Q8N4B5 295 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 NSUN7Q8NE18 718 aaKnown RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CAGE1Q8TC20 777 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ACTRT2Q8TDY3 377 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 STAG1Q8WVM7 1258 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 JDP2Q8WYK2 163 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 HPS3Q969F9 1004 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 FBXL20Q96IG2 436 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 PKNOX2Q96KN3 472 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CAMKK2Q96RR4 588 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 CRAMP1Q96RY5 1269 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 DMRTA2Q96SC8 542 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 C1orf43Q9BWL3 253 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 RHOBTB2Q9BYZ6 727 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 MRPL46Q9H2W6 279 aaKnown RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ARMT1Q9H993 441 aa2.73□□□□□ -1.97
HMGB1-208ENST00000490788 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-208ENST00000490788 KCTD5Q9NXV2 234 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms