RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CLDN10P78369 228 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 IER5LQ5T953 404 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 PDZD4Q76G19 769 aaPredicted RBP19.46■□□□□ 0.71
COL9A3-214ENST00000490398 STKLD1Q8NE28 680 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 SPATA20Q8TB22 786 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 SHKBP1Q8TBC3 707 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 GPR152Q8TDT2 470 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 EEF2KMTQ96G04 330 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 SEPT5Q99719 369 aaPredicted RBP19.46■□□□□ 0.71
COL9A3-214ENST00000490398 KXD1Q9BQD3 176 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 MRPL45Q9BRJ2 306 aaKnown RBP19.46■□□□□ 0.71
COL9A3-214ENST00000490398 PLA2G2FQ9BZM2 168 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 ABI2Q9NYB9 513 aaPredicted RBP19.46■□□□□ 0.71
COL9A3-214ENST00000490398 GTF3C4Q9UKN8 822 aa19.46■□□□□ 0.71
COL9A3-214ENST00000490398 DMDP11532 3685 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 MYBPHLA2RUH7 354 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 CALUO43852 315 aaPredicted RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 PRPF40AO75400 957 aaKnown RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 CFHP08603 1231 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 NR2F2P24468 414 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 EPHA5P54756 1037 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 VCPP55072 806 aaKnown RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 MYO1EQ12965 1108 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 MGAT5BQ3V5L5 792 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 INTS6LQ5JSJ4 861 aaKnown RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 ISM2Q6H9L7 571 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 DNAJB7Q7Z6W7 309 aaPredicted RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 TMEM86AQ8N2M4 240 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 GIPC2Q8TF65 315 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 TIGD1Q96MW7 591 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 ACBD6Q9BR61 282 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 PI4K2AQ9BTU6 479 aa19.45■□□□□ 0.7
COL9A3-214ENST00000490398 ZFP37Q9Y6Q3 630 aaPredicted RBP19.45■□□□□ 0.7
COL9A3-214ENST00000490398 HAPLN1P10915 354 aaPredicted RBP19.44■□□□□ 0.7
COL9A3-214ENST00000490398 FCARP24071 287 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 PRCPP42785 496 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 ALDH1A3P47895 512 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 PSMC1P62191 440 aaKnown RBP19.44■□□□□ 0.7
COL9A3-214ENST00000490398 TEAD2Q15562 447 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 STXBP5Q5T5C0 1151 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 SDHAF4Q5VUM1 108 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 IQCEQ6IPM2 695 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 ELMOD1Q8N336 334 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 MMS19Q96T76 1030 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 CRTAC1Q9NQ79 661 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 ASAH2Q9NR71 780 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 CHMP5Q9NZZ3 219 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 NCANO14594 1321 aa19.44■□□□□ 0.7
COL9A3-214ENST00000490398 A0A1W2PRU2 124 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 PDGFRBP09619 1106 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 TRIM49P0CI25 452 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 TRIM49CP0CI26 452 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 CYP2F1P24903 491 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 PMS1P54277 932 aaKnown RBP19.43■□□□□ 0.7
COL9A3-214ENST00000490398 EPHB3P54753 998 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 MYL7Q01449 175 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 TSPY1Q01534 308 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 BIRC3Q13489 604 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 NFIL3Q16649 462 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 FAM78AQ5JUQ0 283 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 CYP4A22Q5TCH4 519 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 ZNF658Q5TYW1 1059 aaPredicted RBP19.43■□□□□ 0.7
COL9A3-214ENST00000490398 TANGO2Q6ICL3 276 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 GAREM2Q75VX8 874 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 DPH6Q7L8W6 267 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 GPIHBP1Q8IV16 184 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 DCP1BQ8IZD4 617 aaKnown RBP19.43■□□□□ 0.7
COL9A3-214ENST00000490398 FBXL6Q8N531 539 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 NXF1Q9UBU9 619 aaKnown RBP19.43■□□□□ 0.7
COL9A3-214ENST00000490398 R3HCC1Q9Y3T6 440 aaKnown RBP19.43■□□□□ 0.7
COL9A3-214ENST00000490398 PCDHB5Q9Y5E4 795 aa19.43■□□□□ 0.7
COL9A3-214ENST00000490398 KRBA1A5PL33 1030 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 KIF20AO95235 890 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 NPR3P17342 541 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 WARSP23381 471 aaKnown RBP19.42■□□□□ 0.7
COL9A3-214ENST00000490398 RAP1GAPP47736 663 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 LHX1P48742 406 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 CDH8P55286 799 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 GPC5P78333 572 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 PLD1Q13393 1074 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 ADAM9Q13443 819 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 TRPC3Q13507 836 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 NCOA4Q13772 614 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 DDR2Q16832 855 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 WDR72Q3MJ13 1102 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 SPPL2BQ8TCT7 592 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 SMARCE1Q969G3 411 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 PSMG2Q969U7 264 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 NXPE3Q969Y0 559 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 SYT15Q9BQS2 421 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 SDCBP2Q9H190 292 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 DPEP3Q9H4B8 488 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 SMYD3Q9H7B4 428 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 IL21Q9HBE4 155 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.42■□□□□ 0.7
COL9A3-214ENST00000490398 HSFX1Q9UBD0 423 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 MAN1B1Q9UKM7 699 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 COL4A3Q01955 1670 aa19.42■□□□□ 0.7
COL9A3-214ENST00000490398 ZDBF2Q9HCK1 2354 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 TRIM49BA6NDI0 452 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms