RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GPC5P78333 572 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 IFI16Q16666 785 aaKnown RBP23.01■■□□□ 1.27
SMC4-221ENST00000489573 CRIPAKQ8N1N5 446 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 TMEM35BQ8NCS4 154 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 CPA5Q8WXQ8 436 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 VWCEQ96DN2 955 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 NME7Q9Y5B8 376 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 B3GAT3O94766 335 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 DDHD2O94830 711 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 ITGB8P26012 769 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 CDH5P33151 784 aaPredicted RBP23.01■■□□□ 1.27
SMC4-221ENST00000489573 GNL1P36915 607 aaPredicted RBP23.01■■□□□ 1.27
SMC4-221ENST00000489573 RNASELQ05823 741 aaKnown RBP23.01■■□□□ 1.27
SMC4-221ENST00000489573 DCLRE1AQ6PJP8 1040 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 ACOT1Q86TX2 421 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 ZNF280BQ86YH2 543 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 COLGALT2Q8IYK4 626 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 RSPH1Q8WYR4 309 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 ZNF653Q96CK0 615 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 ARHGEF26Q96DR7 871 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 TRIM11Q96F44 468 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 CASD1Q96PB1 797 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 FAM193BQ96PV7 902 aaPredicted RBP23.01■■□□□ 1.27
SMC4-221ENST00000489573 ZNF518BQ9C0D4 1074 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 GTF3C4Q9UKN8 822 aa23.01■■□□□ 1.27
SMC4-221ENST00000489573 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.01■■□□□ 1.275e-7■■■■□ 23.7
SMC4-221ENST00000489573 O00370 1275 aa23■■□□□ 1.27
SMC4-221ENST00000489573 NOP2P46087 812 aaKnown RBP23■■□□□ 1.27
SMC4-221ENST00000489573 STILQ15468 1287 aa23■■□□□ 1.27
SMC4-221ENST00000489573 CNGA2Q16280 664 aa23■■□□□ 1.27
SMC4-221ENST00000489573 TIGD5Q53EQ6 642 aa23■■□□□ 1.27
SMC4-221ENST00000489573 WSCD1Q658N2 575 aa23■■□□□ 1.27
SMC4-221ENST00000489573 DENND1BQ6P3S1 775 aa23■■□□□ 1.27
SMC4-221ENST00000489573 OSTM1Q86WC4 334 aa23■■□□□ 1.27
SMC4-221ENST00000489573 PHF13Q86YI8 300 aaPredicted RBP23■■□□□ 1.27
SMC4-221ENST00000489573 MCOLN2Q8IZK6 566 aa23■■□□□ 1.27
SMC4-221ENST00000489573 TMEM86AQ8N2M4 240 aa23■■□□□ 1.27
SMC4-221ENST00000489573 LHX5Q9H2C1 402 aa23■■□□□ 1.27
SMC4-221ENST00000489573 STXBP5LQ9Y2K9 1186 aa23■■□□□ 1.27
SMC4-221ENST00000489573 B4GALT3O60512 393 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 MYBL1P10243 752 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 GATMP50440 423 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 MFSD5Q6N075 450 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 CD300LGQ6UXG3 332 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 MON1BQ7L1V2 547 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 RHOT2Q8IXI1 618 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 TMEM199Q8N511 208 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 C1orf131Q8NDD1 294 aaKnown RBP22.99■■□□□ 1.27
SMC4-221ENST00000489573 NAPGQ99747 312 aaPredicted RBP22.99■■□□□ 1.27
SMC4-221ENST00000489573 MRPL9Q9BYD2 267 aaKnown RBP22.99■■□□□ 1.27
SMC4-221ENST00000489573 PCDHGC5Q9Y5F6 944 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 TTC3P53804 2025 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 MICAL3Q7RTP6 2002 aa22.99■■□□□ 1.27
SMC4-221ENST00000489573 CTAGE9A4FU28 777 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 GABRDO14764 452 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 MICAL2O94851 1124 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 KIF4AO95239 1232 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 CYP1A2P05177 515 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 ODC1P11926 461 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 CSF2RAP15509 400 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 TCEAL1Q15170 157 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 PAN2Q504Q3 1202 aaKnown RBP22.98■■□□□ 1.27
SMC4-221ENST00000489573 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.98■■□□□ 1.274e-23■■■■■ 72.8
SMC4-221ENST00000489573 CRYBG2Q8N1P7 616 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 SLC35G2Q8TBE7 412 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 TNIP3Q96KP6 325 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 DPEP3Q9H4B8 488 aa22.98■■□□□ 1.27
SMC4-221ENST00000489573 ABHD14A-ACY1A0A1B0GW23 586 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 TMEM189-UBE2V1I3L0A0 370 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 M0QYV0 167 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 HCRTO43612 131 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 PFKMP08237 780 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 PDGFRBP09619 1106 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 LMO2P25791 158 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 BRCC3P46736 316 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 C1QBPQ07021 282 aaKnown RBP22.97■■□□□ 1.27
SMC4-221ENST00000489573 LCLAT1Q6UWP7 414 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 SPATA18Q8TC71 538 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 HASPINQ8TF76 798 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 VCPIP1Q96JH7 1222 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 C11orf70Q9BRQ4 267 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 ADAM22Q9P0K1 906 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 CTTNBP2NLQ9P2B4 639 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 CNOT8Q9UFF9 292 aaKnown RBP22.97■■□□□ 1.27
SMC4-221ENST00000489573 ARHGEF37A1IGU5 675 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 M0QZQ0 153 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 ATMINO43313 823 aaPredicted RBP22.97■■□□□ 1.27
SMC4-221ENST00000489573 PALMO75781 387 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 OR1G1P47890 313 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 LHX1P48742 406 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 RGS19P49795 217 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 ARHGAP17Q68EM7 881 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 MMS22LQ6ZRQ5 1243 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 C12orf29Q8N999 325 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 TPCN2Q8NHX9 752 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 CALR3Q96L12 384 aaKnown RBP22.97■■□□□ 1.27
SMC4-221ENST00000489573 OSGEPQ9NPF4 335 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 AVENQ9NQS1 362 aaPredicted RBP22.97■■□□□ 1.27
SMC4-221ENST00000489573 TSPAN16Q9UKR8 245 aa22.97■■□□□ 1.27
SMC4-221ENST00000489573 DSEQ9UL01 958 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms