RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 STXBP5Q5T5C0 1151 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 GPR158Q5T848 1215 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 SHC4Q6S5L8 630 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 PDCL2Q8N4E4 241 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 HPS3Q969F9 1004 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 ABI2Q9NYB9 513 aaPredicted RBP24.33■■□□□ 1.49
PTPN4-211ENST00000488279 R3HCC1Q9Y3T6 440 aaKnown RBP24.33■■□□□ 1.49
PTPN4-211ENST00000488279 PCDHB5Q9Y5E4 795 aa24.33■■□□□ 1.49
PTPN4-211ENST00000488279 SCN1AP35498 2009 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 COL4A3Q01955 1670 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 SHISA7A6NL88 538 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 DPYSL4O14531 572 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 KRT19P08727 400 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 ZSCAN22P10073 491 aaPredicted RBP24.32■■□□□ 1.48
PTPN4-211ENST00000488279 ATF6P18850 670 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 ASIC1P78348 528 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 FZD5Q13467 585 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 NFE2Q16621 373 aaPredicted RBP24.32■■□□□ 1.48
PTPN4-211ENST00000488279 FOXD4L6Q3SYB3 417 aaPredicted RBP24.32■■□□□ 1.48
PTPN4-211ENST00000488279 FOXD4L3Q6VB84 417 aaPredicted RBP24.32■■□□□ 1.48
PTPN4-211ENST00000488279 GPIHBP1Q8IV16 184 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 GLIS3Q8NEA6 775 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 CSGALNACT1Q8TDX6 532 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 GIPC2Q8TF65 315 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 FAM3CQ92520 227 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 RSPRY1Q96DX4 576 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 GCNAQ96QF7 691 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 NDRG2Q9UN36 371 aaKnown RBP24.32■■□□□ 1.48
PTPN4-211ENST00000488279 PIAS3Q9Y6X2 628 aa24.32■■□□□ 1.48
PTPN4-211ENST00000488279 ZNF233A6NK53 670 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 CHADO15335 359 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 TMEM191BP0C7N4 346 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 CDC25CP30307 473 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 MLLT6P55198 1093 aaPredicted RBP24.31■■□□□ 1.48
PTPN4-211ENST00000488279 CSTF1Q05048 431 aaKnown RBP24.31■■□□□ 1.48
PTPN4-211ENST00000488279 FCHO2Q0JRZ9 810 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 BFSP1Q12934 665 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 SURF1Q15526 300 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 CNNM4Q6P4Q7 775 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 TMEM86AQ8N2M4 240 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 CXorf38Q8TB03 319 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 ANKRD36BP1Q96IX9 119 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 C7orf25Q9BPX7 421 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 ACBD6Q9BR61 282 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 MKNK1Q9BUB5 465 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 MTMR12Q9C0I1 747 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 TASP1Q9H6P5 420 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 GDAP2Q9NXN4 497 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 DDX43Q9NXZ2 648 aaKnown RBP24.31■■□□□ 1.48
PTPN4-211ENST00000488279 L1RE1Q9UN81 338 aa24.31■■□□□ 1.48
PTPN4-211ENST00000488279 ANK1P16157 1881 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 ARNTLO00327 626 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 POLR2DO15514 142 aaKnown RBP24.3■■□□□ 1.48
PTPN4-211ENST00000488279 MYL7Q01449 175 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 MAGEF1Q9HAY2 307 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 KIAA1586Q9HCI6 787 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 OBP2AQ9NY56 170 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 SNX9Q9Y5X1 595 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 NCANO14594 1321 aa24.3■■□□□ 1.48
PTPN4-211ENST00000488279 EIF3DO15371 548 aaKnown RBP eCLIP24.29■■□□□ 1.48
PTPN4-211ENST00000488279 F13A1P00488 732 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 WEE1P30291 646 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 HOXD13P35453 343 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 ME1P48163 572 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 MYO1EQ12965 1108 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 DUOXA2Q1HG44 320 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 SCARA3Q6AZY7 606 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 ZNF687Q8N1G0 1237 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 ZNF507Q8TCN5 953 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 FAM84AQ96KN4 292 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 PI4K2AQ9BTU6 479 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 IL21Q9HBE4 155 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 TMLHEQ9NVH6 421 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 INTS13Q9NVM9 706 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 HSPBP1Q9NZL4 362 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 SIX4Q9UIU6 781 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 ZMYM5Q9UJ78 669 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 CACNA1IQ9P0X4 2223 aa24.29■■□□□ 1.48
PTPN4-211ENST00000488279 FAM186AA6NE01 2351 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 KINO60870 393 aaKnown RBP24.28■■□□□ 1.48
PTPN4-211ENST00000488279 PRPF40AO75400 957 aaKnown RBP24.28■■□□□ 1.48
PTPN4-211ENST00000488279 TNNC2P02585 160 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 CCNE1P24864 410 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 LHX1P48742 406 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 KPNA1P52294 538 aaPredicted RBP24.28■■□□□ 1.48
PTPN4-211ENST00000488279 CYP4F8P98187 520 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 MTAPQ13126 283 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 FAM26FQ5R3K3 315 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 ATL3Q6DD88 541 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 C1orf228Q6PIY5 440 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 EPM2AIP1Q7L775 607 aaPredicted RBP24.28■■□□□ 1.48
PTPN4-211ENST00000488279 CBWD2Q8IUF1 395 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 TOP6BLQ8N6T0 577 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 SPATA18Q8TC71 538 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 ATRIPQ8WXE1 791 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 MSANTD3Q96H12 275 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 LRRC3BQ96PB8 259 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 C8orf33Q9H7E9 229 aaPredicted RBP24.28■■□□□ 1.48
PTPN4-211ENST00000488279 LMAN1LQ9HAT1 526 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 FAM13BQ9NYF5 915 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms