RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 RAB34Q9BZG1 259 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 FOXP1Q9H334 677 aaPredicted RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 FBRSL1Q9HCM7 1045 aaKnown RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 MAPTP10636 758 aaKnown RBP18.62■□□□□ 0.57
VIM-204ENST00000478746 TNFSF9P41273 254 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 CDR1P51861 262 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 ANAPC15P60006 121 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 BFSP1Q12934 665 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 KRT79Q5XKE5 535 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 CC2D1AQ6P1N0 951 aaPredicted RBP18.62■□□□□ 0.57
VIM-204ENST00000478746 MAB21L3Q8N8X9 362 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 IGSF22Q8N9C0 903 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 EXOC4Q96A65 974 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 CHFRQ96EP1 664 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 TSPAN18Q96SJ8 248 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 HAPLN2Q9GZV7 340 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 TDP1Q9NUW8 608 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 EBF1Q9UH73 591 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 WASF3Q9UPY6 502 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 CCL26Q9Y258 94 aa18.62■□□□□ 0.57
VIM-204ENST00000478746 TMEM8BA6NDV4 472 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 PPEF2O14830 753 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 APBB3O95704 486 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 CEACAM1P13688 526 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 PLS3P13797 630 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ARSAP15289 507 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ATF6P18850 670 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 PAX3P23760 479 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 GUCY2CP25092 1073 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 GBP1P32455 592 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 RAD51AP2Q09MP3 1159 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 KYAT1Q16773 422 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 SYT13Q7L8C5 426 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 OR10T2Q8NGX3 314 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 RPLP0P6Q8NHW5 317 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 USP13Q92995 863 aaPredicted RBP18.61■□□□□ 0.57
VIM-204ENST00000478746 BICD1Q96G01 975 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 C8orf76Q96K31 380 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 P2RY13Q9BPV8 354 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ADAM33Q9BZ11 813 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ZCWPW1Q9H0M4 648 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 RPF1Q9H9Y2 349 aaKnown RBP18.61■□□□□ 0.57
VIM-204ENST00000478746 ZFYVE26Q68DK2 2539 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ASPMQ8IZT6 3477 aa18.61■□□□□ 0.57
VIM-204ENST00000478746 ZNF638Q14966 1978 aaKnown RBP18.61■□□□□ 0.57
VIM-204ENST00000478746 IGF2RP11717 2491 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 SPEGQ15772 3267 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 LNP1A1A4G5 178 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 KHNYNO15037 678 aaKnown RBP18.6■□□□□ 0.57
VIM-204ENST00000478746 TRAPPC10P48553 1259 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 DGKEP52429 567 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 GNL2Q13823 731 aaKnown RBP18.6■□□□□ 0.57
VIM-204ENST00000478746 DMC1Q14565 340 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 SPATA1Q5VX52 437 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 ABCA7Q8IZY2 2146 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 FAM212AQ96EL1 285 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 TMEM9BQ9NQ34 198 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 NOL7Q9UMY1 257 aaKnown RBP18.6■□□□□ 0.57
VIM-204ENST00000478746 INVSQ9Y283 1065 aa18.6■□□□□ 0.57
VIM-204ENST00000478746 PP2D1A8MPX8 630 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 TOP3BO95985 862 aaKnown RBP18.59■□□□□ 0.57
VIM-204ENST00000478746 F11P03951 625 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 CYP11A1P05108 521 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 CSRP1P21291 193 aaKnown RBP18.59■□□□□ 0.57
VIM-204ENST00000478746 DDX6P26196 483 aaKnown RBP eCLIP18.59■□□□□ 0.57
VIM-204ENST00000478746 U2AF2P26368 475 aaKnown RBP eCLIP18.59■□□□□ 0.57
VIM-204ENST00000478746 CDC25AP30304 524 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 GJA4P35212 333 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 SMARCB1Q12824 385 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 NBR1Q14596 966 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 ACAP1Q15027 740 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 PDGFRLQ15198 375 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 ENOX2Q16206 610 aaKnown RBP18.59■□□□□ 0.57
VIM-204ENST00000478746 KCNK18Q7Z418 384 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 METTL23Q86XA0 190 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 THEM5Q8N1Q8 247 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 C2orf15Q8WU43 125 aaKnown RBP18.59■□□□□ 0.57
VIM-204ENST00000478746 SCNM1Q9BWG6 230 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 TMEM121BQ9BXQ6 578 aaPredicted RBP18.59■□□□□ 0.57
VIM-204ENST00000478746 KIF9Q9HAQ2 790 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 DSEQ9UL01 958 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 TBX20Q9UMR3 447 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 MYH11P35749 1972 aa18.59■□□□□ 0.57
VIM-204ENST00000478746 NUP205Q92621 2012 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 HAPLN1P10915 354 aaPredicted RBP18.58■□□□□ 0.56
VIM-204ENST00000478746 NMT1P30419 496 aaKnown RBP18.58■□□□□ 0.56
VIM-204ENST00000478746 NLRP12P59046 1061 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 PSMD2Q13200 908 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 USP39Q53GS9 565 aaKnown RBP18.58■□□□□ 0.56
VIM-204ENST00000478746 C9orf57Q5W0N0 161 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 NAIF1Q69YI7 327 aaPredicted RBP18.58■□□□□ 0.56
VIM-204ENST00000478746 TXNDC8Q6A555 127 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 TMEM150AQ86TG1 271 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 SPPL2BQ8TCT7 592 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 ACDQ96AP0 544 aa18.58■□□□□ 0.56
VIM-204ENST00000478746 FASNP49327 2511 aaKnown RBP18.57■□□□□ 0.56
VIM-204ENST00000478746 ANK1P16157 1881 aa18.57■□□□□ 0.56
VIM-204ENST00000478746 SRRM3A6NNA2 597 aaPredicted RBP18.57■□□□□ 0.56
VIM-204ENST00000478746 SOBPA7XYQ1 873 aa18.57■□□□□ 0.56
VIM-204ENST00000478746 H0YCG3 227 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms