RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SCFD1Q8WVM8 642 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 C7orf25Q9BPX7 421 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 SMG9Q9H0W8 520 aaKnown RBP17.96■□□□□ 0.47
USP40-212ENST00000473191 ATXN3LQ9H3M9 355 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 TRPV4Q9HBA0 871 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 HSPBP1Q9NZL4 362 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 DSEQ9UL01 958 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 CFAP54Q96N23 3096 aa17.96■□□□□ 0.47
USP40-212ENST00000473191 HSP90AA1P07900 732 aaKnown RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 HAPLN1P10915 354 aaPredicted RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 PAX3P23760 479 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 AFMP43652 599 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 FAM26FQ5R3K3 315 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 GPR158Q5T848 1215 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 RESP18Q5W5W9 173 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 TMEM150AQ86TG1 271 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 ARID3BQ8IVW6 561 aaPredicted RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 THEM5Q8N1Q8 247 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 IQUBQ8NA54 791 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 ZNF507Q8TCN5 953 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 FAM200AQ8TCP9 573 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 NKD2Q969F2 451 aaPredicted RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 ZFYVE19Q96K21 471 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 ZNF560Q96MR9 790 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 PKMYT1Q99640 499 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 PI4K2AQ9BTU6 479 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 CUEDC2Q9H467 287 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 INTS13Q9NVM9 706 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 DDX43Q9NXZ2 648 aaKnown RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 NDRG2Q9UN36 371 aaKnown RBP17.95■□□□□ 0.46
USP40-212ENST00000473191 ZDHHC9Q9Y397 364 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 GTF3C3Q9Y5Q9 886 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 SNX9Q9Y5X1 595 aa17.95■□□□□ 0.46
USP40-212ENST00000473191 PRAMEF12O95522 483 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 ME1P48163 572 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 SOX9P48436 509 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 SOWAHAQ2M3V2 549 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 WDR44Q5JSH3 913 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 CNNM4Q6P4Q7 775 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 TSSK4Q6SA08 328 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 MFSD6LQ8IWD5 586 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 TTC8Q8TAM2 541 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 GZF1Q9H116 711 aaPredicted RBP17.94■□□□□ 0.46
USP40-212ENST00000473191 SLC39A2Q9NP94 309 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 AGPAT3Q9NRZ7 376 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 SPATA6Q9NWH7 488 aaPredicted RBP17.94■□□□□ 0.46
USP40-212ENST00000473191 HSFX1Q9UBD0 423 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 SERTAD1Q9UHV2 236 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 NME7Q9Y5B8 376 aa17.94■□□□□ 0.46
USP40-212ENST00000473191 EIF3DO15371 548 aaKnown RBP eCLIP17.93■□□□□ 0.46
USP40-212ENST00000473191 ATP2C2O75185 946 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 TMEM191BP0C7N4 346 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 HMGA1P17096 107 aaKnown RBP17.93■□□□□ 0.46
USP40-212ENST00000473191 CYP2F1P24903 491 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 LMO2P25791 158 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 PNPLA4P41247 253 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 TUFMP49411 452 aaKnown RBP17.93■□□□□ 0.46
USP40-212ENST00000473191 UNC13DQ70J99 1090 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 LRRC52Q8N7C0 313 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 KCNG4Q8TDN1 519 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 CACTINQ8WUQ7 758 aaKnown RBP17.93■□□□□ 0.46
USP40-212ENST00000473191 DNASE1L2Q92874 299 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 CLDN23Q96B33 292 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 SLC46A2Q9BY10 475 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 GDAP2Q9NXN4 497 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 GTF3C4Q9UKN8 822 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 ITGA11Q9UKX5 1188 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 ASB3Q9Y575 518 aa17.93■□□□□ 0.46
USP40-212ENST00000473191 NUP210Q8TEM1 1887 aaPredicted RBP17.92■□□□□ 0.46
USP40-212ENST00000473191 CACNA1IQ9P0X4 2223 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 MYBPHLA2RUH7 354 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 ZNF233A6NK53 670 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 ZNF263O14978 683 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 KLRC4O43908 158 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 CST3P01034 146 aaPredicted RBP17.92■□□□□ 0.46
USP40-212ENST00000473191 CYP2J2P51589 502 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 RBP5P82980 135 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 AMPD3Q01432 767 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 DDR2Q16832 855 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 INTS6LQ5JSJ4 861 aaKnown RBP17.92■□□□□ 0.46
USP40-212ENST00000473191 ZNF852Q6ZMS4 543 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 ADSSL1Q8N142 457 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 RIN3Q8TB24 985 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 SPPL2BQ8TCT7 592 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 DEPDC1BQ8WUY9 529 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 KBTBD7Q8WVZ9 684 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 IRF7Q92985 503 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 BCO2Q9BYV7 579 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 OSBPL6Q9BZF3 934 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 RCOR1Q9UKL0 485 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 PCDHB5Q9Y5E4 795 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 PIAS3Q9Y6X2 628 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 OBSL1O75147 1896 aa17.92■□□□□ 0.46
USP40-212ENST00000473191 SLC38A8A6NNN8 435 aa17.91■□□□□ 0.46
USP40-212ENST00000473191 GABRDO14764 452 aa17.91■□□□□ 0.46
USP40-212ENST00000473191 ACTN4O43707 911 aaKnown RBP17.91■□□□□ 0.46
USP40-212ENST00000473191 HUS1O60921 280 aa17.91■□□□□ 0.46
USP40-212ENST00000473191 PRPF40AO75400 957 aaKnown RBP17.91■□□□□ 0.46
USP40-212ENST00000473191 TADA3O75528 432 aa17.91■□□□□ 0.46
USP40-212ENST00000473191 CCNE1P24864 410 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms