RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CHMP4CQ96CF2 233 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 HIST1H2AHQ96KK5 128 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 DEFB118Q96PH6 123 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 PLEKHG4BQ96PX9 1271 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 HIST1H2AJQ99878 128 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 CSRNP2Q9H175 543 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 KCTD10Q9H3F6 313 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 AASDHPPTQ9NRN7 309 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 RIPOR2Q9Y4F9 1068 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 DDX60LQ5H9U9 1706 aaKnown RBP5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ROCK1Q13464 1354 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 SPEGQ15772 3267 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 EP300Q09472 2414 aaPredicted RBP5.13□□□□□ -1.59
VPS13A-210ENST00000471439 ZZEF1O43149 2961 aa5.13□□□□□ -1.59
VPS13A-210ENST00000471439 CHD7Q9P2D1 2997 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 SMG1Q96Q15 3661 aaKnown RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 ST20-MTHFSA0A0A6YYL1 179 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 TRIM75PA6NK02 468 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 PPIP5K2O43314 1243 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 ALDH1A2O94788 518 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 SEC24DO94855 1032 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 RBP3P10745 1247 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 PTTG1IPP53801 180 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 UBXN2AP68543 259 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 CCT2P78371 535 aaKnown RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 HHEXQ03014 270 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 MGAT5Q09328 741 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 PIN1Q13526 163 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 CLUL1Q15846 466 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 UGT8Q16880 541 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 GAGE13Q4V321 117 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 FKBP15Q5T1M5 1219 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 FNDC7Q5VTL7 733 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 C1QL3Q5VWW1 255 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 KCNK18Q7Z418 384 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 SLC41A1Q8IVJ1 513 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 CDYL2Q8N8U2 506 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 CNBD1Q8NA66 436 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 PPP1R14CQ8TAE6 165 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 GAB3Q8WWW8 586 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 TSR2Q969E8 191 aaKnown RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 RMDN1Q96DB5 314 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 ACAP3Q96P50 834 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 SLC2A13Q96QE2 648 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 TCF25Q9BQ70 676 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 METTL14Q9HCE5 456 aaKnown RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 MSL2Q9HCI7 577 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 DNAJC28Q9NX36 388 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 MKS1Q9NXB0 559 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 EVLQ9UI08 416 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-210ENST00000471439 GIT1Q9Y2X7 761 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 ABCA12Q86UK0 2595 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 TONSLQ96HA7 1378 aa5.12□□□□□ -1.59
VPS13A-210ENST00000471439 BRWD1Q9NSI6 2320 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 NPHP1O15259 732 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 DAPK3O43293 454 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 XPOTO43592 962 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 NARSO43776 548 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 MARCH6O60337 910 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 ABLIM3O94929 683 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 SCGB1D2O95969 90 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 JUNP05412 331 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 CASRP41180 1078 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 MTNR1BP49286 362 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 RABGGTBP53611 331 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 EPHB1P54762 984 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 PRMT2P55345 433 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 LGALS4P56470 323 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 SLC25A3Q00325 362 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 TNIP1Q15025 636 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 NFE2Q16621 373 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 OTUD7BQ6GQQ9 843 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 RAET1EQ8TD07 263 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 TSPEARQ8WU66 669 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 JADE3Q92613 823 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 ZNF512Q96ME7 567 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 HNRNPABQ99729 332 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 LBHD1Q9BQE6 289 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 RHOBTB2Q9BYZ6 727 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 ZIM2Q9NZV7 527 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 DPP7Q9UHL4 492 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 SCAF8Q9UPN6 1271 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 LUC7L2Q9Y383 392 aaKnown RBP5.11□□□□□ -1.59
VPS13A-210ENST00000471439 ITPR3Q14573 2671 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 RIC1Q4ADV7 1423 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 LTBP2Q14767 1821 aa5.11□□□□□ -1.59
VPS13A-210ENST00000471439 KRTAP23-1A1A580 65 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 PRPF3O43395 683 aaKnown RBP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 FZD7O75084 574 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 FSBPO95073 299 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 ZNF202O95125 648 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 ZRANB2O95218 330 aaKnown RBP eCLIP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 COL1A1P02452 1464 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 ALADP13716 330 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 CAPN2P17655 700 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 C5AR1P21730 350 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 HOXC9P31274 260 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 SPIDRQ14159 915 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 ACAP2Q15057 778 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms