RNA–Protein interactions for RNA: ENST00000470247.1

SREBF1-209, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 5

Gene SREBF1, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-209	ENST00000470247	DNAJB1	P25685	340 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	CTNNB1	P35222	781 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	SMAD3	P84022	425 aa	Known RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	DSG1	Q02413	1049 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	YWHAH	Q04917	246 aa	Predicted RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	CAMK1	Q14012	370 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	RAB30	Q15771	203 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	USP41	Q3LFD5	358 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	OVOS1	Q6IE37	1185 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	FAM171B	Q6P995	826 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	ACOT1	Q86TX2	421 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	LRRTM3	Q86VH5	581 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	VPS52	Q8N1B4	723 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	ZNF397	Q8NF99	534 aa	Predicted RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	PIK3R5	Q8WYR1	880 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	TMEM176A	Q96HP8	235 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	PANX2	Q96RD6	677 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	TGS1	Q96RS0	853 aa	Known RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	TMEM209	Q96SK2	561 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	CHP1	Q99653	195 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	ACBD6	Q9BR61	282 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	TTPAL	Q9BTX7	342 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	NT5C1A	Q9BXI3	368 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	NUCKS1	Q9H1E3	243 aa	Known RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	CRTAC1	Q9NQ79	661 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	ARHGAP20	Q9P2F6	1191 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	NOCT	Q9UK39	431 aa	Known RBP	12	□□□□□ -0.49
SREBF1-209	ENST00000470247	RWDD3	Q9Y3V2	267 aa		12	□□□□□ -0.49
SREBF1-209	ENST00000470247	LAMA3	Q16787	3333 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ARHGEF37	A1IGU5	675 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	MYBPHL	A2RUH7	354 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247		A8MXQ7	604 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ADAM12	O43184	909 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	CFH	P08603	1231 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	PAEP	P09466	180 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	TPM1	P09493	284 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	CYP11B1	P15538	503 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	FER	P16591	822 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	PTPN1	P18031	435 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	USP8	P40818	1118 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	GSDMD	P57764	484 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	CDK17	Q00537	523 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ARID5A	Q03989	594 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ASIC2	Q16515	512 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ASTE1	Q2TB18	679 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	PAQR9	Q6ZVX9	377 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	NOP9	Q86U38	636 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	METTL23	Q86XA0	190 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	CEP57	Q86XR8	500 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	LRRC8A	Q8IWT6	810 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	GPR65	Q8IYL9	337 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	C12orf29	Q8N999	325 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	EPS8L1	Q8TE68	723 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ZNF606	Q8WXB4	792 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	SAMD11	Q96NU1	681 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ZCWPW1	Q9H0M4	648 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ZBP1	Q9H171	429 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	SNX25	Q9H3E2	840 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	HAUS4	Q9H6D7	363 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	ALG13	Q9NP73	1137 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	TMLHE	Q9NVH6	421 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	MSRA	Q9UJ68	235 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	CDH9	Q9ULB4	789 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	COLQ	Q9Y215	455 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	LZTS1	Q9Y250	596 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	TSC2	P49815	1807 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	MYO7A	Q13402	2215 aa		11.99	□□□□□ -0.49
SREBF1-209	ENST00000470247	EPOP	A6NHQ4	379 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247		H3BNC9	293 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	GRM6	O15303	877 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	SERPING1	P05155	500 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	CTSA	P10619	480 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	VDR	P11473	427 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	BRD2	P25440	801 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	DNAJB2	P25686	324 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	BPIFB4	P59827	614 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	ERVFC1	P60507	584 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	PSMC1	P62191	440 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	KRT17	Q04695	432 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	PTK2	Q05397	1052 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	LRIT3	Q3SXY7	679 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	INTS6L	Q5JSJ4	861 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	ANKS3	Q6ZW76	656 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	B3GALNT2	Q8NCR0	500 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	SLC20A1	Q8WUM9	679 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	AUTS2	Q8WXX7	1259 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	RIN2	Q8WYP3	895 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	HEXIM2	Q96MH2	286 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	PCDHB18P	Q96TA0	734 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	SYT15	Q9BQS2	421 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	CLSTN3	Q9BQT9	956 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	KCNF1	Q9H3M0	494 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	RXFP1	Q9HBX9	757 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	MTRR	Q9UBK8	725 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	MTUS1	Q9ULD2	1270 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	KIAA1257	Q9ULG3	409 aa		11.98	□□□□□ -0.49
SREBF1-209	ENST00000470247	BACE2	Q9Y5Z0	518 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms