RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LIASO43766 372 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 CD48P09326 243 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 TXNP10599 105 aaKnown RBP20.18■□□□□ 0.82
VIM-203ENST00000469543 IL1R2P27930 398 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 KCNV1Q6PIU1 500 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 VSTM1Q6UX27 236 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 MICALCLQ6ZW33 695 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 SULF1Q8IWU6 871 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 CPB2Q96IY4 423 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 SDCBP2Q9H190 292 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 RNF19AQ9NV58 838 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 PTPRFP10586 1907 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 GOLGA6L7A0A1B0GV03 622 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 C5orf60A6NFR6 353 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 ARSEP51690 589 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 RAB6CQ53S08 254 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 CDCA2Q69YH5 1023 aaPredicted RBP20.18■□□□□ 0.82
VIM-203ENST00000469543 GRK7Q8WTQ7 553 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 WDR90Q96KV7 1748 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 TMEM109Q9BVC6 243 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 RAB6CQ9H0N0 254 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 PTPRHQ9HD43 1115 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 SIX4Q9UIU6 781 aa20.18■□□□□ 0.82
VIM-203ENST00000469543 HGSO14964 777 aaPredicted RBP20.17■□□□□ 0.82
VIM-203ENST00000469543 CYP2C8P10632 490 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 LACTBP83111 547 aaPredicted RBP20.17■□□□□ 0.82
VIM-203ENST00000469543 CCDC121Q6ZUS5 278 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 TMEM35BQ8NCS4 154 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 PCSK1NQ9UHG2 260 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 NAALADL1Q9UQQ1 740 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 GPS1Q13098 491 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 SYCP2LQ5T4T6 812 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 SPOCD1Q6ZMY3 1216 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.17■□□□□ 0.82
VIM-203ENST00000469543 ZBTB8OSQ8IWT0 167 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 SRRM1Q8IYB3 904 aaKnown RBP20.17■□□□□ 0.82
VIM-203ENST00000469543 CCDC89Q8N998 374 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 DCPSQ96C86 337 aaKnown RBP20.17■□□□□ 0.82
VIM-203ENST00000469543 CPXM1Q96SM3 734 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 CXCL16Q9H2A7 254 aa20.17■□□□□ 0.82
VIM-203ENST00000469543 IGKV6-21A0A0C4DH24 114 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 SRRM3A6NNA2 597 aaPredicted RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 CPP00450 1065 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 MXD4Q14582 209 aaPredicted RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 YTHDF3Q7Z739 585 aaKnown RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 CENPTQ96BT3 561 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 SMYD3Q9H7B4 428 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 EFCC1Q9HA90 598 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 A0A0G2JLL6 359 aaPredicted RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 HNRNPH1P31943 449 aaKnown RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 GDF10P55107 478 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 SLC20A2Q08357 652 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 PPP1R15BQ5SWA1 713 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 SH3PXD2AQ5TCZ1 1133 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 MFSD5Q6N075 450 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 MPZL3Q6UWV2 235 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 PRRT2Q7Z6L0 340 aaPredicted RBP20.16■□□□□ 0.82
VIM-203ENST00000469543 C1orf127Q8N9H9 656 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 MAIP1Q8WWC4 291 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 CDT1Q9H211 546 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 IFT122Q9HBG6 1241 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 PPP2R3BQ9Y5P8 575 aa20.16■□□□□ 0.82
VIM-203ENST00000469543 ACKR2O00590 384 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 VTNP04004 478 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 ITGB3P05106 788 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 PECAM1P16284 738 aaPredicted RBP20.15■□□□□ 0.82
VIM-203ENST00000469543 CDR1P51861 262 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 ACTN3Q08043 901 aaPredicted RBP20.15■□□□□ 0.82
VIM-203ENST00000469543 HIBCHQ6NVY1 386 aaPredicted RBP20.15■□□□□ 0.82
VIM-203ENST00000469543 TSHZ1Q6ZSZ6 1077 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 RCOR2Q8IZ40 523 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 DYDC1Q8WWB3 177 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 KIF9Q9HAQ2 790 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 SAYSD1Q9NPB0 183 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 TCP11X1B4DZS4 312 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 BRAFP15056 766 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 MAGEA4P43358 317 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 KCTD2Q14681 263 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 CCDC62Q6P9F0 684 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 SPATS2Q86XZ4 545 aaKnown RBP20.15■□□□□ 0.82
VIM-203ENST00000469543 KCNN1Q92952 543 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 FZD8Q9H461 694 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 FGFR1OP2Q9NVK5 253 aa20.15■□□□□ 0.82
VIM-203ENST00000469543 A0A087WZ62 844 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 LACTBL1A8MY62 500 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 FSBPO95073 299 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 PROZP22891 400 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 CDKN2BP42772 138 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 MBTD1Q05BQ5 628 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 ZKSCAN8Q15776 578 aaPredicted RBP20.14■□□□□ 0.82
VIM-203ENST00000469543 ANKRD20A8PQ5CZ79 823 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 UBA3Q8TBC4 463 aa20.14■□□□□ 0.82
VIM-203ENST00000469543 FDXACB1Q9BRP7 624 aaPredicted RBP20.14■□□□□ 0.82
VIM-203ENST00000469543 ROPN1BQ9BZX4 212 aaPredicted RBP20.14■□□□□ 0.82
VIM-203ENST00000469543 ROPN1Q9HAT0 212 aaPredicted RBP20.14■□□□□ 0.82
VIM-203ENST00000469543 SGK1O00141 431 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 CALB1P05937 261 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 KRT3P12035 628 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 PSMA2P25787 234 aa20.14■□□□□ 0.81
VIM-203ENST00000469543 JADE1Q6IE81 842 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms