RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 LEXMQ3ZCV2 418 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 VWA3BQ502W6 1294 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 INTS6LQ5JSJ4 861 aaKnown RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 LIN9Q5TKA1 542 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 CDKAL1Q5VV42 579 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 SCARA5Q6ZMJ2 495 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 RNF19BQ6ZMZ0 732 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 CCDC149Q6ZUS6 474 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 RTL10Q7L3V2 364 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 LRRTM3Q86VH5 581 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 DCP1BQ8IZD4 617 aaKnown RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 AOPEPQ8N6M6 819 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 C12orf76Q8N812 135 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-204ENST00000469054 LMO3Q8TAP4 145 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 TATDN2Q93075 761 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 TUBGCP2Q9BSJ2 902 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 BCO2Q9BYV7 579 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 NIF3L1Q9GZT8 377 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 S1PR5Q9H228 398 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 SNX25Q9H3E2 840 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 SFXN1Q9H9B4 322 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 CD207Q9UJ71 328 aa12.78□□□□□ -0.36
VPS13D-204ENST00000469054 MTMR11A4FU01 709 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ZMYND10O75800 440 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 SLC34A2O95436 690 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 CAVIN2O95810 425 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 C8AP07357 584 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 PDGFRBP09619 1106 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ZNF18P17022 549 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 RAP1GAPP47736 663 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 CLUL1Q15846 466 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 AAK1Q2M2I8 961 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 SLC39A12Q504Y0 691 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 DHX40Q8IX18 779 aaKnown RBP12.77□□□□□ -0.37
VPS13D-204ENST00000469054 TCEAL8Q8IYN2 117 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ATAD1Q8NBU5 361 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 SMRP1Q8NCR6 262 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 EHBP1Q8NDI1 1231 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 CMASQ8NFW8 434 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-204ENST00000469054 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ATXN2LQ8WWM7 1075 aaKnown RBP12.77□□□□□ -0.37
VPS13D-204ENST00000469054 NT5C1BQ96P26 610 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 PGLYRP2Q96PD5 576 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 SYT15Q9BQS2 421 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 APOL5Q9BWW9 433 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 HSD3B7Q9H2F3 369 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ADAM7Q9H2U9 754 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 NDST4Q9H3R1 872 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 CYP4F11Q9HBI6 524 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 ZDHHC7Q9NXF8 308 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 CDH9Q9ULB4 789 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 NME7Q9Y5B8 376 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 VWA8A3KMH1 1905 aa12.77□□□□□ -0.37
VPS13D-204ENST00000469054 SPTBN5Q9NRC6 3674 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 CCDC195A0A1B0GUA6 201 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 MYBPHLA2RUH7 354 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 GTPBP10A4D1E9 387 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 BECN2A8MW95 431 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 A8MXQ7 604 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 RFPL2O75678 378 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 PAPLNO95428 1278 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 SEC24AO95486 1093 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 VNN2O95498 520 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 CDK11BP21127 795 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 HOXA9P31269 272 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 ITIH3Q06033 890 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 LRMPQ12912 555 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 DUSP4Q13115 394 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 SMAD4Q13485 552 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 IQCB1Q15051 598 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 KRT31Q15323 416 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 NFE2Q16621 373 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 PUS10Q3MIT2 529 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 MIIPQ5JXC2 388 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 PPM1LQ5SGD2 360 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 RARS2Q5T160 578 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 FAM171BQ6P995 826 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 TMC5Q6UXY8 1006 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 ANKRD20A12PQ8NF67 263 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 SLC7A14Q8TBB6 771 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 C2orf15Q8WU43 125 aaKnown RBP12.76□□□□□ -0.37
VPS13D-204ENST00000469054 PKMYT1Q99640 499 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 TMLHEQ9NVH6 421 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 TAB2Q9NYJ8 693 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 HSFX1Q9UBD0 423 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 GTF3C4Q9UKN8 822 aa12.76□□□□□ -0.37
VPS13D-204ENST00000469054 TRANK1O15050 2925 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 PRRG1O14668 218 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 MBTPS2O43462 519 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 ATP2C2O75185 946 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 TPM2P07951 284 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 HNRNPA1P09651 372 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 PTPN1P18031 435 aaKnown RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 TBXAS1P24557 533 aaPredicted RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 NDST1P52848 882 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 PSMC1P62191 440 aaKnown RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 MRPS5P82675 430 aaKnown RBP12.75□□□□□ -0.37
VPS13D-204ENST00000469054 INCA1Q0VD86 236 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 CUL2Q13617 745 aa12.75□□□□□ -0.37
VPS13D-204ENST00000469054 MAPRE1Q15691 268 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms