RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PIAS3Q9Y6X2 628 aa17.86■□□□□ 0.45
CCDC28B-204ENST00000469003 GOLGA8IPA6NC78 632 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 GOLGA8JA6NMD2 632 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 TULP1O00294 542 aaPredicted RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 ARNTLO00327 626 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 KIAA0391O15091 583 aaKnown RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 CHADO15335 359 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 YEATS4O95619 227 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 ITGB3P05106 788 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 HAPLN1P10915 354 aaPredicted RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 MLLT6P55198 1093 aaPredicted RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 FCHO2Q0JRZ9 810 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 E2F4Q16254 413 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 GPR158Q5T848 1215 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 STXBP4Q6ZWJ1 553 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 GPD1LQ8N335 351 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 LRRC52Q8N7C0 313 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 FAM3CQ92520 227 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 PCIF1Q9H4Z3 704 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 EPG5Q9HCE0 2579 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 KBTBD4Q9NVX7 518 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 OBP2AQ9NY56 170 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 ABI2Q9NYB9 513 aaPredicted RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 TFIP11Q9UBB9 837 aaKnown RBP17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 ITGA11Q9UKX5 1188 aa17.85■□□□□ 0.45
CCDC28B-204ENST00000469003 TPRP12270 2363 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 KINO60870 393 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 WEE1P30291 646 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CDC25CP30307 473 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CDR1P51861 262 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 AMPD3Q01432 767 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 TSPY1Q01534 308 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CSTF1Q05048 431 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 TAF12Q16514 161 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 DGLUCYQ7Z3D6 616 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 PDCL2Q8N4E4 241 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CSGALNACT2Q8N6G5 542 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CXorf38Q8TB03 319 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CSGALNACT1Q8TDX6 532 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 NOC3LQ8WTT2 800 aaKnown RBP17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 MSANTD3Q96H12 275 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 IER2Q9BTL4 223 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 TRIM9Q9C026 710 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CHRDQ9H2X0 955 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 TASP1Q9H6P5 420 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 IL21Q9HBE4 155 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 PDE11AQ9HCR9 933 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 PRMT8Q9NR22 394 aaPredicted RBP17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 L1RE1Q9UN81 338 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 PCDHB5Q9Y5E4 795 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 CEP250Q9BV73 2442 aa17.84■□□□□ 0.45
CCDC28B-204ENST00000469003 DPYSL4O14531 572 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 CUTAO60888 179 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 HUS1O60921 280 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 RBP5P82980 135 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 BFSP1Q12934 665 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 NFE2Q16621 373 aaPredicted RBP17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 CNNM4Q6P4Q7 775 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 C1orf228Q6PIY5 440 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 TMEM86AQ8N2M4 240 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 SPATA18Q8TC71 538 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 GIPC2Q8TF65 315 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 LEO1Q8WVC0 666 aaPredicted RBP17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 DHX58Q96C10 678 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 FAM84AQ96KN4 292 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 GCNAQ96QF7 691 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 ACBD6Q9BR61 282 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 TMLHEQ9NVH6 421 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 GDAP2Q9NXN4 497 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 SIX4Q9UIU6 781 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 PCDHGA2Q9Y5H1 932 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 F5P12259 2224 aa17.83■□□□□ 0.44
CCDC28B-204ENST00000469003 DENND4CQ5VZ89 1909 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 FRYLO94915 3013 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 MED19A0JLT2 244 aaPredicted RBP17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 EIF3DO15371 548 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 KRT19P08727 400 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 TMEM191BP0C7N4 346 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 PDIA4P13667 645 aaKnown RBP17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 CYP4F8P98187 520 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 MTAPQ13126 283 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 ARHGAP29Q52LW3 1261 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 SCARA3Q6AZY7 606 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 SHC4Q6S5L8 630 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 MAMSTRQ6ZN01 415 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 GPIHBP1Q8IV16 184 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 IQUBQ8NA54 791 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 SUMF1Q8NBK3 374 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 ZBTB44Q8NCP5 570 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 GLIS3Q8NEA6 775 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 NELL1Q92832 810 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 HPS3Q969F9 1004 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 RMDN1Q96DB5 314 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 LRRC3BQ96PB8 259 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 MTMR12Q9C0I1 747 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 C8orf33Q9H7E9 229 aaPredicted RBP17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 LMAN1LQ9HAT1 526 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 INTS13Q9NVM9 706 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 ZSCAN32Q9NX65 697 aa17.82■□□□□ 0.44
CCDC28B-204ENST00000469003 DDX43Q9NXZ2 648 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms