RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 RAB21Q9UL25 225 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 ANKRD63C9JTQ0 380 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 PQBP1O60828 265 aaKnown RBP8.08□□□□□ -1.12
USP54-210ENST00000466048 GLRA2P23416 452 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 MAN1A1P33908 653 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 POU5F1Q01860 360 aaKnown RBP8.08□□□□□ -1.12
USP54-210ENST00000466048 PPTC7Q8NI37 304 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 SH3TC2Q8TF17 1288 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP54-210ENST00000466048 CCDC97Q96F63 343 aaPredicted RBP8.08□□□□□ -1.12
USP54-210ENST00000466048 CGRRF1Q99675 332 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 DDX50Q9BQ39 737 aaKnown RBP8.08□□□□□ -1.12
USP54-210ENST00000466048 SLITRK6Q9H5Y7 841 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 GOLGA8QA0A0J9YX86 632 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 GOLGA8OA6NCC3 632 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 GOLGA8NF8WBI6 632 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 STK25O00506 426 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 LGALS2P05162 132 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 GPC5P78333 572 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 MEI1Q5TIA1 1274 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 GPAT2Q6NUI2 795 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 NFRKBQ6P4R8 1299 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 BSNDQ8WZ55 320 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 TSEN34Q9BSV6 310 aaKnown RBP8.08□□□□□ -1.12
USP54-210ENST00000466048 STRIP2Q9ULQ0 834 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 RWDD3Q9Y3V2 267 aa8.08□□□□□ -1.12
USP54-210ENST00000466048 TMEM150BA6NC51 233 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 RCCD1A6NED2 376 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 CCDC188H7C350 402 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 CAND2O75155 1236 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 POU5F1BQ06416 359 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 PPP3CAQ08209 521 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 TMEM132DQ14C87 1099 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 TARBP2Q15633 366 aaKnown RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 PTGISQ16647 500 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 NBPF20Q3BBV1 942 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 FBXO46Q6PJ61 603 aaPredicted RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 OR6B3Q8NGW1 331 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 LRRC8CQ8TDW0 803 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 YME1L1Q96TA2 773 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 ITGB1BP2Q9UKP3 347 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 OTOFQ9HC10 1997 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 LRRIQ3A6PVS8 624 aaPredicted RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 KRIT1O00522 736 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 TOM1L1O75674 476 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 ADRB2P07550 413 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 INSRRP14616 1297 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 PHBP35232 272 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 GUCY2DQ02846 1103 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 TMED1Q13445 227 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP54-210ENST00000466048 ASAP3Q8TDY4 903 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 PXYLP1Q8TE99 480 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 LZICQ8WZA0 190 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 SENP6Q9GZR1 1112 aaPredicted RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 UVRAGQ9P2Y5 699 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 FAM50BQ9Y247 325 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 CAPN6Q9Y6Q1 641 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 A0A0U1RQJ8 604 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 OGTO15294 1046 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 THAP12O43422 761 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 DCTN3O75935 186 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 BAG2O95816 211 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 ADCYAP1R1P41586 468 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 GALCP54803 685 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 MRPS35P82673 323 aaKnown RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 SP2Q02086 613 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 TCEAL1Q15170 157 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 SUGP1Q8IWZ8 645 aaKnown RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 CCDC105Q8IYK2 499 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 FAM71AQ8IYT1 594 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 USP6NLQ92738 828 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 MAML3Q96JK9 1138 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 DEFB118Q96PH6 123 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 SH2D3AQ9BRG2 576 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 KIFC3Q9BVG8 833 aa8.07□□□□□ -1.12
USP54-210ENST00000466048 CHCHD3Q9NX63 227 aaKnown RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 NXF1Q9UBU9 619 aaKnown RBP8.07□□□□□ -1.12
USP54-210ENST00000466048 PGRMC1O00264 195 aaKnown RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 DDX3XO00571 662 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP54-210ENST00000466048 LRRN2O75325 713 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 PHEXP78562 749 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 C4orf50Q6ZRC1 276 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 WDR49Q8IV35 697 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 GLYCTKQ8IVS8 523 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 ZNF784Q8NCA9 323 aaPredicted RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 TPCN2Q8NHX9 752 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 ANKRD27Q96NW4 1050 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP54-210ENST00000466048 HDAC6Q9UBN7 1215 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 POLR2AP24928 1970 aaKnown RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 MYH9P35579 1960 aaKnown RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 PTPRFP10586 1907 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 FOXN3O00409 490 aaPredicted RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 HNRNPCL1O60812 293 aaKnown RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 INHAP05111 366 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 HADHBP55084 474 aaKnown RBP8.06□□□□□ -1.12
USP54-210ENST00000466048 LY6KQ17RY6 165 aa8.06□□□□□ -1.12
USP54-210ENST00000466048 ARL13BQ3SXY8 428 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms