RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DYNC1LI1Q9Y6G9 523 aaKnown RBP24.45■■□□□ 1.5
USP4-208ENST00000464168 SCN1AP35498 2009 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 LRP3O75074 770 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 CDC25CP30307 473 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 CNR2P34972 360 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 DDIT3P35638 169 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 TAF6P49848 677 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 PLCB2Q00722 1185 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 HEATR6Q6AI08 1181 aaKnown RBP24.44■■□□□ 1.5
USP4-208ENST00000464168 SLFN12LQ6IEE8 588 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 CRELD2Q6UXH1 353 aaPredicted RBP24.44■■□□□ 1.5
USP4-208ENST00000464168 THEM5Q8N1Q8 247 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 RASSF8Q8NHQ8 419 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 GIPC2Q8TF65 315 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 CCSER1Q9C0I3 900 aa24.44■■□□□ 1.5
USP4-208ENST00000464168 SMG9Q9H0W8 520 aaKnown RBP24.44■■□□□ 1.5
USP4-208ENST00000464168 BMP15O95972 392 aa24.43■■□□□ 1.5
USP4-208ENST00000464168 HAPLN1P10915 354 aaPredicted RBP24.43■■□□□ 1.5
USP4-208ENST00000464168 HOXA6P31267 233 aa24.43■■□□□ 1.5
USP4-208ENST00000464168 POU5F1Q01860 360 aaKnown RBP24.43■■□□□ 1.5
USP4-208ENST00000464168 LARP1BQ659C4 914 aaKnown RBP24.43■■□□□ 1.5
USP4-208ENST00000464168 SYNPOQ8N3V7 929 aa24.43■■□□□ 1.5
USP4-208ENST00000464168 C2orf15Q8WU43 125 aaKnown RBP24.43■■□□□ 1.5
USP4-208ENST00000464168 LARP4BQ92615 738 aaKnown RBP24.43■■□□□ 1.5
USP4-208ENST00000464168 SMC3Q9UQE7 1217 aa24.43■■□□□ 1.5
USP4-208ENST00000464168 ADSSP30520 456 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 SMARCB1Q12824 385 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 SF3A1Q15459 793 aaKnown RBP24.42■■□□□ 1.5
USP4-208ENST00000464168 TAF12Q16514 161 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 ITPRIPL2Q3MIP1 535 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 ZNF720Q7Z2F6 126 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 TMEM150AQ86TG1 271 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 EFCAB13Q8IY85 973 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 SPPL2BQ8TCT7 592 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 CNTNAP3BQ96NU0 1288 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 GCNAQ96QF7 691 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 CNTNAP3Q9BZ76 1288 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 GKN1Q9NS71 199 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 SEMA4GQ9NTN9 838 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 THG1LQ9NWX6 298 aaKnown RBP24.42■■□□□ 1.5
USP4-208ENST00000464168 TSC2P49815 1807 aa24.42■■□□□ 1.5
USP4-208ENST00000464168 ANK1P16157 1881 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 SDK1Q7Z5N4 2213 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 KPNA7A9QM74 516 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 MCM2P49736 904 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 CMTM8Q8IZV2 173 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 KRI1Q8N9T8 703 aaKnown RBP24.41■■□□□ 1.5
USP4-208ENST00000464168 FAM83CQ9BQN1 747 aa24.41■■□□□ 1.5
USP4-208ENST00000464168 ABI2Q9NYB9 513 aaPredicted RBP24.41■■□□□ 1.5
USP4-208ENST00000464168 NUP210Q8TEM1 1887 aaPredicted RBP24.41■■□□□ 1.5
USP4-208ENST00000464168 F11P03951 625 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 HMGA1P17096 107 aaKnown RBP24.4■■□□□ 1.5
USP4-208ENST00000464168 CSRP2Q16527 193 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 USP49Q70CQ1 688 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 BRAPQ7Z569 592 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.4■■□□□ 1.5
USP4-208ENST00000464168 SFR1Q86XK3 245 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 DCP1BQ8IZD4 617 aaKnown RBP24.4■■□□□ 1.5
USP4-208ENST00000464168 NETO1Q8TDF5 533 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 POMGNT1Q8WZA1 660 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 EPSTI1Q96J88 318 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 STRA6Q9BX79 667 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 TMLHEQ9NVH6 421 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 ZMYM5Q9UJ78 669 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 CCL26Q9Y258 94 aa24.4■■□□□ 1.5
USP4-208ENST00000464168 CNOT1A5YKK6 2376 aaKnown RBP24.4■■□□□ 1.5
USP4-208ENST00000464168 KMT2BQ9UMN6 2715 aaPredicted RBP24.4■■□□□ 1.5
USP4-208ENST00000464168 LOC105378220A0A1B0GUY1 285 aaPredicted RBP24.39■■□□□ 1.49
USP4-208ENST00000464168 SLC30A4O14863 429 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 EXTL3O43909 919 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 PPP1R37O75864 691 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 NLRP12P59046 1061 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 SV2CQ496J9 727 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 PRR23CQ6ZRP0 262 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 DYMQ7RTS9 669 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 WDR5BQ86VZ2 330 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 MAB21L3Q8N8X9 362 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 HPS4Q9NQG7 708 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 PCDHB5Q9Y5E4 795 aa24.39■■□□□ 1.49
USP4-208ENST00000464168 OTOL1A6NHN0 477 aaPredicted RBP24.38■■□□□ 1.49
USP4-208ENST00000464168 IL18RAPO95256 599 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 WNT7BP56706 349 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 KCNA1Q09470 495 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 POSTNQ15063 836 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 PKN3Q6P5Z2 889 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 NT5DC4Q86YG4 428 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 FAM160A2Q8N612 972 aaPredicted RBP24.38■■□□□ 1.49
USP4-208ENST00000464168 USP13Q92995 863 aaPredicted RBP24.38■■□□□ 1.49
USP4-208ENST00000464168 HVCN1Q96D96 273 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 CHFRQ96EP1 664 aa24.38■■□□□ 1.49
USP4-208ENST00000464168 GDF9O60383 454 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 AVPR1AP37288 418 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 RUNX3Q13761 415 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 PTPAQ15257 358 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 TMEM196Q5HYL7 178 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 TXNDC8Q6A555 127 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 CEP68Q76N32 757 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 ZSWIM2Q8NEG5 633 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 PI4K2AQ9BTU6 479 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 EBF3Q9H4W6 596 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms