RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 SPATA31D4Q6ZUB0 917 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 SV2AQ7L0J3 742 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 OTOP3Q7RTS5 596 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 FILIP1Q7Z7B0 1213 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 GJD3Q8N144 294 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ELMOD1Q8N336 334 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 TDRD5Q8NAT2 981 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 LEMD2Q8NC56 503 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 KBTBD7Q8WVZ9 684 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 APOL5Q9BWW9 433 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 PIDD1Q9HB75 910 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 CYP4F11Q9HBI6 524 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ABCB6Q9NP58 842 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 DDX43Q9NXZ2 648 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 ARMCX3Q9UH62 379 aaPredicted RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 RWDD2AQ9UIY3 292 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 CDH9Q9ULB4 789 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 YIPF1Q9Y548 306 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ZFP37Q9Y6Q3 630 aaPredicted RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 KIF26AQ9ULI4 1882 aaPredicted RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 TNFRSF10AO00220 468 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 PMM2O15305 246 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 N4BP1O75113 896 aaKnown RBP12.7□□□□□ -0.38
VPS52-213ENST00000461743 VNN1O95497 513 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 CST3P01034 146 aaPredicted RBP12.7□□□□□ -0.38
VPS52-213ENST00000461743 TRIM49P0CI25 452 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 TRIM49CP0CI26 452 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 PTMSP20962 102 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 SSTR3P32745 418 aaPredicted RBP12.7□□□□□ -0.38
VPS52-213ENST00000461743 TUFMP49411 452 aaKnown RBP12.7□□□□□ -0.38
VPS52-213ENST00000461743 MYL6P60660 151 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 WDR72Q3MJ13 1102 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 SLC39A12Q504Y0 691 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 ISM2Q6H9L7 571 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 RNF19BQ6ZMZ0 732 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 CCDC150Q8NCX0 1101 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 GPT2Q8TD30 523 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 ACSF2Q96CM8 615 aaPredicted RBP12.7□□□□□ -0.38
VPS52-213ENST00000461743 FUBP3Q96I24 572 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS52-213ENST00000461743 ASB3Q9Y575 518 aa12.7□□□□□ -0.38
VPS52-213ENST00000461743 VNN2O95498 520 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 HLA-DRAP01903 254 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 OR4Q2P0C623 313 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 TRIM21P19474 475 aaKnown RBP12.69□□□□□ -0.38
VPS52-213ENST00000461743 GCLMP48507 274 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 NOP14P78316 857 aaKnown RBP12.69□□□□□ -0.38
VPS52-213ENST00000461743 PPP3CAQ08209 521 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 CFAP221Q4G0U5 840 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 CCDC40Q4G0X9 1142 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 DCAF17Q5H9S7 520 aaPredicted RBP12.69□□□□□ -0.38
VPS52-213ENST00000461743 C4orf50Q6ZRC1 276 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 OSTM1Q86WC4 334 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 ZDHHC14Q8IZN3 488 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 TTC39CQ8N584 583 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 FBXL13Q8NEE6 735 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 SLC35C1Q96A29 364 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 CEP295NLQ96MC4 621 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 MMS19Q96T76 1030 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 PKMYT1Q99640 499 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 DUSP9Q99956 384 aaKnown RBP12.69□□□□□ -0.38
VPS52-213ENST00000461743 SYT15Q9BQS2 421 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS52-213ENST00000461743 PCDHB5Q9Y5E4 795 aa12.69□□□□□ -0.38
VPS52-213ENST00000461743 P4HA2O15460 535 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 CCL16O15467 120 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 MICAL2O94851 1124 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 CLSTN1O94985 981 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 SEC24AO95486 1093 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 FGF19O95750 216 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 CCDC192P0DO97 292 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 PTPN2P17706 415 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 ERCC5P28715 1186 aaPredicted RBP12.68□□□□□ -0.38
VPS52-213ENST00000461743 ALDH1A3P47895 512 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 EPHB3P54753 998 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 EPHA5P54756 1037 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 NLRP12P59046 1061 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 TWF1Q12792 350 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 PABPC1LQ4VXU2 614 aaKnown RBP12.68□□□□□ -0.38
VPS52-213ENST00000461743 CCDC183Q5T5S1 534 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 TCERG1LQ5VWI1 586 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 SCARA3Q6AZY7 606 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 IQCEQ6IPM2 695 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 FAM171BQ6P995 826 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 ITIH5Q86UX2 942 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 TAS1R2Q8TE23 839 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 NECAB3Q96P71 396 aaPredicted RBP12.68□□□□□ -0.38
VPS52-213ENST00000461743 TMEM209Q96SK2 561 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 BCO2Q9BYV7 579 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 DNAI2Q9GZS0 605 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 NIF3L1Q9GZT8 377 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 SNX25Q9H3E2 840 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 CYP3A43Q9HB55 503 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 EPS15L1Q9UBC2 864 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 CDH22Q9UJ99 828 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 COQ4Q9Y3A0 265 aa12.68□□□□□ -0.38
VPS52-213ENST00000461743 C2CD4DB7Z1M9 353 aa12.67□□□□□ -0.38
VPS52-213ENST00000461743 DLL1O00548 723 aa12.67□□□□□ -0.38
VPS52-213ENST00000461743 ZNF197O14709 1029 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms