RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 PARM1Q6UWI2 310 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 SPATA31D4Q6ZUB0 917 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 INTS8Q75QN2 995 aaKnown RBP13.5□□□□□ -0.25
HDAC4-207ENST00000461113 WDR49Q8IV35 697 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 FAM186BQ8IYM0 893 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 C18orf25Q96B23 403 aaPredicted RBP13.5□□□□□ -0.25
HDAC4-207ENST00000461113 PDE11AQ9HCR9 933 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 LTB4R2Q9NPC1 389 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 CTNND2Q9UQB3 1225 aa13.5□□□□□ -0.25
HDAC4-207ENST00000461113 PPP1R3GB7ZBB8 358 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 TMEM189-UBE2V1I3L0A0 370 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 TEX28O15482 410 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 GNA14O95837 355 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 GLUD1P00367 558 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 KRT19P08727 400 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 PNPLA4P41247 253 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 RBP5P82980 135 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 SHC2P98077 582 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 CREMQ03060 361 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 TRPC3Q13507 836 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 ZBTB6Q15916 424 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 UPP1Q16831 310 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 KLHL40Q2TBA0 621 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 ANKRD40Q6AI12 368 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 LAIR1Q6GTX8 287 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 CAVIN1Q6NZI2 390 aaKnown RBP13.49□□□□□ -0.25
HDAC4-207ENST00000461113 FUT10Q6P4F1 479 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 FOXR2Q6PJQ5 311 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 DSTYKQ6XUX3 929 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 CSGALNACT2Q8N6G5 542 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 FGF14Q92915 247 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 ZNF560Q96MR9 790 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 CEP63Q96MT8 703 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 MKNK1Q9BUB5 465 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 GOLGA2P5Q9HBQ8 144 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 METTL14Q9HCE5 456 aaKnown RBP13.49□□□□□ -0.25
HDAC4-207ENST00000461113 SEMA4GQ9NTN9 838 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 ANO10Q9NW15 660 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 TUBGCP4Q9UGJ1 667 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 DPP7Q9UHL4 492 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 ITGA11Q9UKX5 1188 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 COL4A3Q01955 1670 aa13.49□□□□□ -0.25
HDAC4-207ENST00000461113 FASNP49327 2511 aaKnown RBP13.49□□□□□ -0.25
HDAC4-207ENST00000461113 SLC16A3O15427 465 aaKnown RBP13.48□□□□□ -0.25
HDAC4-207ENST00000461113 LRP3O75074 770 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 KIF4AO95239 1232 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 SOD2P04179 222 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 ADH1AP07327 375 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 RETP07949 1114 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 VAMP7P51809 220 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 ENPEPQ07075 957 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 MYO1EQ12965 1108 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 BIRC3Q13489 604 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 NAB2Q15742 525 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 CCDC40Q4G0X9 1142 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 FAM171A1Q5VUB5 890 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 PRR23CQ6ZRP0 262 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 CEP57Q86XR8 500 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 ZSWIM2Q8NEG5 633 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 TMC2Q8TDI7 906 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 HASPINQ8TF76 798 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 DDX1Q92499 740 aaKnown RBP13.48□□□□□ -0.25
HDAC4-207ENST00000461113 RABGGTAQ92696 567 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 CLDN23Q96B33 292 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 CGRRF1Q99675 332 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 HERC2P3Q9BVR0 1158 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 FAM126AQ9BYI3 521 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-207ENST00000461113 CXCL16Q9H2A7 254 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 PRMT8Q9NR22 394 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-207ENST00000461113 INTS13Q9NVM9 706 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 MARCH5Q9NX47 278 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 RWDD2AQ9UIY3 292 aa13.48□□□□□ -0.25
HDAC4-207ENST00000461113 IKBKBO14920 756 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 ERCC5P28715 1186 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 GLUD2P49448 558 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 TAF6P49848 677 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 STX17P56962 302 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 SOX4Q06945 474 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 STX1AQ16623 288 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 SV2CQ496J9 727 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 ZCWPW2Q504Y3 356 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 C9orf57Q5W0N0 161 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 RSPO2Q6UXX9 243 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 PRR23BQ6ZRT6 265 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 TAS1R1Q7RTX1 841 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 FILIP1Q7Z7B0 1213 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 METTL23Q86XA0 190 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 CELF5Q8N6W0 485 aaKnown RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 CCDC150Q8NCX0 1101 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 PAAF1Q9BRP4 392 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 TTPALQ9BTX7 342 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 NAT10Q9H0A0 1025 aaKnown RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 MAGEC2Q9UBF1 373 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 ARMCX3Q9UH62 379 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-207ENST00000461113 ZMIZ1Q9ULJ6 1067 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 AGAP1Q9UPQ3 857 aa13.47□□□□□ -0.25
HDAC4-207ENST00000461113 ZFYVE26Q68DK2 2539 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms