RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SERAC1Q96JX3 654 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 FAM20AQ96MK3 541 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 DDX18Q9NVP1 670 aaKnown RBP12.32□□□□□ -0.44
CPSF3-202ENST00000460593 PHF24Q9UPV7 400 aa12.32□□□□□ -0.44
CPSF3-202ENST00000460593 TCRBV7S3A2A0A539 114 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ARHGEF35A5YM69 484 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ZNF862O60290 1169 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ABHD2P08910 425 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 SREBF1P36956 1147 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 HSPA2P54652 639 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 DLG1Q12959 904 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 UBAP2LQ14157 1087 aaKnown RBP12.31□□□□□ -0.44
CPSF3-202ENST00000460593 C3orf62Q6ZUJ4 267 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 RHPN2Q8IUC4 686 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 SCUBE1Q8IWY4 988 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ULK2Q8IYT8 1036 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 SNRNP27Q8WVK2 155 aaKnown RBP12.31□□□□□ -0.44
CPSF3-202ENST00000460593 PHACTR1Q9C0D0 580 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 FAM192AQ9GZU8 254 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 TMX4Q9H1E5 349 aaPredicted RBP12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ATXN10Q9UBB4 475 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 RABGEF1Q9UJ41 708 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 DENND3A2RUS2 1198 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 SGK1O00141 431 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 SLC16A4O15374 487 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 GDF11O95390 407 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 ARP10275 920 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 MFAP3P55082 362 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 AQP4P55087 323 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 BBS9Q3SYG4 887 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 CES4AQ5XG92 561 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 MFSD7Q6UXD7 560 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 MARK2Q7KZI7 788 aaKnown RBP12.31□□□□□ -0.44
CPSF3-202ENST00000460593 RASSF3Q86WH2 238 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 POU5F2Q8N7G0 328 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 HIC2Q96JB3 615 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 TTC25Q96NG3 672 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 LXNQ9BS40 222 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 VCX3BQ9H321 246 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 UNC45AQ9H3U1 944 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 VCX3AQ9NNX9 186 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 STK32BQ9NY57 414 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 PCDHGB4Q9UN71 923 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 PCDHGB5Q9Y5G0 923 aa12.31□□□□□ -0.44
CPSF3-202ENST00000460593 IGLV3-22A0A075B6J6 115 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CCDC160A6NGH7 325 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 LIASO43766 372 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 LPXNO60711 386 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 GAS7O60861 476 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PDE5AO76074 875 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 MAN1A1P33908 653 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 GDF10P55107 478 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 GEMIN4P57678 1058 aaKnown RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 LSAMPQ13449 338 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PEX6Q13608 980 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 NCOA4Q13772 614 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 SPOPLQ6IQ16 392 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PAOXQ6QHF9 649 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CDHR3Q6ZTQ4 885 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 FBXO11Q86XK2 927 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 NAT14Q8WUY8 206 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 FAM210AQ96ND0 272 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ACAP3Q96P50 834 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 HSFX1Q9UBD0 423 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PACSIN3Q9UKS6 424 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ANGPTL2Q9UKU9 493 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 RPL26L1Q9UNX3 145 aaKnown RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 NHSQ6T4R5 1651 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CYB561D2O14569 222 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 FAM200BP0CF97 657 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 VAV1P15498 845 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 DSG3P32926 999 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 EPHB1P54762 984 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 SLC25A3Q00325 362 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CENPCQ03188 943 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ARID3BQ8IVW6 561 aaPredicted RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 BANPQ8N9N5 519 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 XXYLT1Q8NBI6 393 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CCDC110Q8TBZ0 833 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PYROXD1Q8WU10 500 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ABTB1Q969K4 478 aaPredicted RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CENPKQ9BS16 269 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 AMNQ9BXJ7 453 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 CDK5RAP2Q96SN8 1893 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ARHGAP42A6NI28 874 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 MAGEB3O15480 346 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PFDN1O60925 122 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 RPL7AP62424 266 aaKnown RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 IRX4P78413 519 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PDE1BQ01064 536 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 AP3B2Q13367 1082 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 SLC15A2Q16348 729 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PADI6Q6TGC4 694 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 PRPF39Q86UA1 669 aaKnown RBP12.3□□□□□ -0.44
CPSF3-202ENST00000460593 TDRPQ86YL5 185 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 FBXO36Q8NEA4 188 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 MKL1Q969V6 931 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 MTBPQ96DY7 904 aa12.3□□□□□ -0.44
CPSF3-202ENST00000460593 ZNFX1Q9P2E3 1918 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 SPDYE16A6NNV3 312 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms