RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 KRT1P04264 644 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 GFAPP14136 432 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MXI1P50539 228 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SLC34A1Q06495 639 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 BMT2Q1RMZ1 405 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 KIRREL3Q8IZU9 778 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RNF217Q8TC41 542 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ACTRT1Q8TDG2 376 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SNRNP27Q8WVK2 155 aaKnown RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 FAM193BQ96PV7 902 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TSSK1BQ9BXA7 367 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SPATC1LQ9H0A9 340 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TRPV6Q9H1D0 765 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 PLAGL2Q9UPG8 496 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ATP11BQ9Y2G3 1177 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 AFG3L2Q9Y4W6 797 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 LTBP1Q14766 1721 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ADGRA3Q8IWK6 1321 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CCL15-CCL14A0A0B4J2E2 113 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 DENND3A2RUS2 1198 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 GTPBP10A4D1E9 387 aaKnown RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF233A6NK53 670 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RSPH10B2B2RC85 870 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 K7ERI5 159 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RSPH10BP0C881 870 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 INPP1P49441 399 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 VAMP7P51809 220 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RPS6KA3P51812 740 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 NOGQ13253 232 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CCL15Q16663 113 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SH3D19Q5HYK7 790 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ACAD11Q709F0 780 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TRIM59Q8IWR1 403 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RNF169Q8NCN4 708 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CDCA5Q96FF9 252 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RNPEPL1Q9HAU8 725 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CYP39A1Q9NYL5 469 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 SCHIP1Q9P0W5 487 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 LRFN2Q9ULH4 789 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 KPNA7A9QM74 516 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 KBTBD13C9JR72 458 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 GAS2O43903 313 aaKnown RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ITGB5P18084 799 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TNNI1P19237 187 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 FGFR4P22455 802 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TRPC1P48995 793 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 GTF2A2P52657 109 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 EPHB1P54762 984 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ACTR2P61160 394 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 XRCC4Q13426 336 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 DCTN2Q13561 401 aaKnown RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MAPRE2Q15555 327 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 ECM1Q16610 540 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 TRMT5Q32P41 509 aaKnown RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MAP1SQ66K74 1059 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-202ENST00000460333 JADE1Q6IE81 842 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 JAMLQ86YT9 394 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 LENG9Q96B70 501 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CEP19Q96LK0 163 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 CCT7Q99832 543 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 C2orf40Q9H1Z8 148 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 PCIF1Q9H4Z3 704 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 MLXIPLQ9NP71 852 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 GGT7Q9UJ14 662 aa6.5□□□□□ -1.37
VPS13D-202ENST00000460333 RPTORQ8N122 1335 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ZC3H4Q9UPT8 1303 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ECM29Q5VYK3 1845 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 USP2O75604 605 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SUPT20HL2P0C7V6 817 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ATP6V1C1P21283 382 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 RARRES1P49788 294 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 STAT5BP51692 787 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 EFNA5P52803 228 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ADARP55265 1226 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 FCGRTP55899 365 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 HERVK_113P62684 666 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 PRKCEQ02156 737 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 KRR1Q13601 381 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 LBRQ14739 615 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 PPM1KQ8N3J5 372 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 WDR60Q8WVS4 1066 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 DPF3Q92784 378 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SCYL1Q96KG9 808 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 POLR3FQ9H1D9 316 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 AGPAT3Q9NRZ7 376 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 PKD2L2Q9NZM6 624 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SMIM31A0A1B0GVY4 71 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 MANSC4A6NHS7 340 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SPDYE16A6NNV3 312 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ADM5C9JUS6 153 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SMAPO00193 183 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 E2F6O75461 281 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 S100BP04271 92 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 ATP5BP06576 529 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 MYBL1P10243 752 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 KRT4P19013 534 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 MAP4P27816 1152 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 MLH1P40692 756 aa6.49□□□□□ -1.37
VPS13D-202ENST00000460333 SKIV2L2P42285 1042 aaKnown RBP6.49□□□□□ -1.37
VPS13D-202ENST00000460333 MARSP56192 900 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms